RNA id: TCONS_00008546


Basic Information

Item Value
RNA id TCONS_00008546
length 4699
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_003224
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7281239 ~ 7286310 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATCTGCGTATTTTGTCTGCTGATGCTAGTGGGCTGGTTGGTTACTAAAGGTGAAATGTTTCTGGTTTGCCTTGATGGATTCTGCATGAATGGTATTCTGACAGGAGATTTCTGTGTTTTCCTGTCTATAGGGGATTTAGAGTTTTGATCAATGTTTGAATTTCTTCCTCTTCTGTCTGGCGGGCTGGATGGTGCTGATGCCACCTTCTCTGTTCCTTTTATGGGAGGCTGGGAGTAAAGCTTGAGCCAGACATAAATGACAAAACTGACTCAGACTCTGATGAGGGTTCCTGGGACTTTGAAGCTTGTAACTTGGTTATGATTGTATTCGCTCCTTCTTGTATTGCTCTCCATTCAACACTATTGAGATCAGAGTCCTTGTCTGATGCCATTTCATCACTATCTAGGTCATTATCAAGACCCCTGTCCTCTGCTGCTTTCTGAAGAGTAgctttttgtttgtgctttttcTCAGCTTTTCGTTTTCGGGCAGCTTGCCTTTTCTTGTGTTGTGGCATAGCAGATGTTATGCATTTTATCAAAAGATCATCTTCTGAATCCATGCTGACTGAACTAGGCGAGCTGTTCTCTTCAAACTGGTTGAGGTCTTTCTGTGACTTTGGATGGCACTGAAGGTTGGACATTATGTTATGTCTATTCTTTATCCACGTATGTTGAGGATTTTCATGTTCCTCAAATTCAGCATCACTTAAAGAACTAAGAGAGGAACTCAAAGAGTAGCATGGAGGTGCTTCTTCTAAAattagattttgtttgattctgtGAAAACCATTTTGGCGGGACTGATAACTGTTGACTTGATCTTGTATGTTAGCATTACGTATTATATTGCTTGAATCATATTGTTGTTTCCGTCCAGTCCTATTCATCTGTCCATCATGCCTTTCCATTTTATGACAAATGCCTTCTGTAGATGATGGATGACGCCTCGACTTTAGGGATAGAGTGTTTTCCTGCACATGACTTAGATAGCAGGTTTTCTGATTTTGGTACACCTCAGTGCTTTGTTTTCTCATGGGAAAATCCAACTGTGGCATGCTTCTTGACAGATTCTGTCCTTGCTTTTGAATTTGTCTAACTGGAGACTGGCTTTGAATTCGTTGCTGGGTCATTTTTGCTGCCATCTCTTTACTTTGTATTAGTAATCTCTGAGTGGGAACCATTCTTCTGATCGTTTTGTTCAGTTGATTCGTGACTAGGTGAGACTGACATGCTATTTTAGTTGGTTTGTGGAAGCGAGAGAACATGCGTAGGTCTTCAATTCTCTTTGCCTCGATATCAACAAGCTCTTGTGTCTCTTTGTTTCTTCGCCAGTCTTTCATGCCTTTAGTTCTGGCTGGATATTGAAGAGTTTCATCACTCAAGGAAGTGGTGCTTGAGAAATTGATGGGTGTACCTTCGGCAGAGTCTGTGTAAGAGGAATCATCATGATAGATTTCTTTCGAAGACATTCCAAGCTTTTGTCCAGTACACATTTGATTGTTTTTGTTCTGCAGCACCATATAAACTGGCACAGATTTTCGAGCCTGCATGTTGATTACTTGGTTTGAGAGACTGGGTATCACAGTGGACCTTACCTTCTTAAACCTGGAAGGCATGGCGGAATTAATGCACTCTTTGAGAATTTCAATGTCATCATCTGAGTTGCCTTCACTATATTGGTCTTCCATATCCTCTTCTTTTTCAGACTCCTctggatcattgtcttgttggTTTAGCAAAGGGGTAAGTTTGAGCTCCACATCTTTCTGAACATAGTGTTCATGCAGTGGAAGGGCACTCAGACTTGAGGCACACGAGAAATTCTCAATCGGCTTTTCCACAGTGAAATAGATCATTGTGTCCAAATCCTGAGGTAGGTTAAACCTTTCTTTAAAGTCTGCAATTTCCATAAACTTGCGCAAACTACTCTCCCATTGGCTTCCTACACCACTAAGATTCTGAGCATCTGCTCCACCTGACTCTGGACAGCATGGAGTTTTACTGCGACTAGGAGGCATTGTTTGTCCCGGGCTGTCTGGTAGGTCACTGGGGCTTACAGTTCCACTTATCATTTCACTACATGGATCACTCTGAATAGAGCTGGCAATTGAAGGAGATTCAAAGCTGCCAAGTGAGCTCACTGAACTACAGCGACTCATTACAAGAGGTGTTTCGTGAATGTAGTTGTCCGAAGAACTGGATGGCGTCCTGTCCTCAAGTATTACTGGGGACACTCCTCTAAGGAACCTCTTCTCATTTTTGATTGTACCAGAGATCTCAATTGGGTCAGAGCTACTGATTTTCTGATCAGTTACTAATAACTGACTGTCACTCAAGTCATCAAGTGTCTCGTTCTCATCCTCTTCATCTTTTCTCTCAACATTCACGTCTTCTACCTCTATGATTTCCAATGAGGAGTCACTTTCTAGCTCATTTTCAGTTTGACTTTGTCCATCAAGAGCTCCATCCCCAGAGGACAAAGAGGACAGAGAACTGCAACGAGAGAAGCATATTGGAGTGTTCTCTACAGAATACTTCTGAGGAGTTTCCAGCTGTCCTATTGTGGGACTTCTTGCAGAACATATTGGGGAAAACTTGCTAATGCTTCCACCAGTCATAACTGCTGGAACCCAAGCTTGCCTGCGCATTGCTTGAGCTGCCTGAACATTAATTGCAGTCTTTGCAACACCAAACTTGGCAACACTCTGGATCAGTGGAACATGCTGATAGGAGGGAGACAACTTGACAGTTGGTATGCTAGTTTCTGAAGAAACCTTTGTTGAAACAGTTGCAGGGGTTGATATAAATGGCTCTTGGCTTTTCTCTGTATCTGTGGATCCTGAATCAGGCAAAATAGCATCTTTGTTTGCCTCGAAATCTCTTTCAGGTATTTCATTTTGACACAAGACTCTTGAAATATGTACACCACTAGTCAGTGGTTCCTCATGAGCTACCTTAAGGTCAAGCTTATTTGGACGTCGTTGTTCTGTTGGTCTGGCAGAGGGATGAGTCTGGTCTTGACTGCCACAATAGCCATCACTGATGCTACCACTGTTAAGGCTGTCATTGGATAAGCTTGAGTTTGTTGTTTTAAGACGCATAAAGGCATGTGCTCTGCTGAGACGCTCTTTAGGAGAAAAAGTGCTGCTATCTGAGAGAGGACATGGGGAGCATGAAATGGCTCTCGCTTCATGAAGCTCATCTGGCCCGTAATTCCAATCCAAAAAATGATCTTCTGAACTGAGACTGAAGCTGTCCTCTGATGATGTATGCATGGTAATGTCATCTACCAGTTTGTCAATTTTAGCCACTGTGTTGGTGATCTTCTTGGCCAATTTTTCAGCTGCCACAGTCACTTCGTCGTCAGGAGGTTGTGATCTTTTAATGTCTGTTTGAAAGGTTTCAATGTCTTGCTCGGGCTCCCCCTCGCGCTTACGAAGCTGCGTATTAAGGAAGTTAGAATTGTTCAAGAACATGGAGAGCATGGAAAATGTCCCAGTGTCCAGGCTGGTGGATACATTAGGTGCTTCATCATCATCAAAACAGCCTGAATCTGAAGCATAGTCCTTTGCTAGGCTCTCAATATGCCTCAATGGCTTGTTTATATTGGCATGCTTGAAACTTTGCTTCTCAAGTGTGTCAAATGTTTCTGCTAGATGCTTTGCATCCAACTCAGCCTCTAATGCTTTCTGCTTCCTCATATAGAGGGACGGCATGCATGATCCCGGGGATATAACAGCTGCATCTTTATATTTGAGTGGACGATTTGTGAGGAGGTTTCGCAGAGCTGCAGCACTTCCCATGGCTATCATTTTGTGCTTTGAGTTGATGAGATTGCGTAGCATGCTTACAGCTCCCAGATCCCACAGCAATTCCTGGTCTTTTGGACTTCGTGCAGACAGGTTCCAGAGGGTTCCACACGCATTACTCACAATAGTCAAACTGTGAGATCGCAAATGCTGTAGCAGAGTCTGAAGGCAGTTATGATCCCTGAGGATTTGCCTGCATTAGGAAAACAGGAGAAATTTAAGTAATATTACTGATAATTTAACCAAGAGctctgtttattttgtaaatgtaaacaaacttGATACCTGTAATCATCTCGGGTGGCGATGAGGCTGGACACATTGCGCAGAATGCCTCCACCGCTCTCAATAATGGCCAGTGAGTTGGTTTGGCATCGGTAAGTCAAAGTGCTAACCAAAAAGCCAAGAGCACCATCAACAGAGCAAATTGCCACCTTATTCTCAGTGCTGTGCGCTGACAAATTCCACAGTGCACTTAACACACTCTTTAATGTGGATTCCTATGGAGAAGACCATGAAAAGTTTAATACTGAGTGGTAATGAAACACCACTTTTAATGACTGAAATCATAAAGAAATTGATTGTACCTTTGTAGCCTGCAATGCACAAGTCATAAGTCCTGATACACTGCCGACATCCCTCAAAGCCCTCTTACTATTGATATCAGCACGCCATGACAGGTTTCTTAGTATACTTGACACAACCTAAAAATAATGACAGATCACAGAAATGTTGTGAGTCAAATACTTAGAAATGGTTGAAtcaaaaaatactattaaaactattaaaaagtagCTTAAATACCTGCTGTAATTCCTCGCTATCTGATGCTAGCTGTGCAACGATGGCTTGAAGACAATTTTTCTTTGAGCAAAGTGTAGCCTGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006350 lncRNA upstream 61879 7214674 ~ 7219360 (+) True XLOC_003221
TCONS_00008542 lncRNA upstream 129232 7149606 ~ 7152007 (+) False XLOC_003217
TCONS_00008544 lncRNA upstream 129232 7149669 ~ 7152007 (+) False XLOC_003217
TCONS_00008543 lncRNA upstream 129232 7149669 ~ 7152007 (+) False XLOC_003217
TCONS_00008545 lncRNA upstream 129232 7149699 ~ 7152007 (+) False XLOC_003217
TCONS_00006366 lncRNA downstream 434029 7720339 ~ 7722326 (+) True XLOC_003226
TCONS_00006367 lncRNA downstream 496204 7782514 ~ 7783314 (+) True XLOC_003227
TCONS_00008388 lncRNA downstream 539043 7825353 ~ 7826072 (+) True XLOC_003228
TCONS_00008547 lncRNA downstream 593832 7880142 ~ 7954546 (+) False XLOC_003229
TCONS_00006368 lncRNA downstream 593867 7880177 ~ 7971030 (+) False XLOC_003229
TCONS_00006358 mRNA upstream 980 7277032 ~ 7280259 (+) False XLOC_003223
TCONS_00006356 mRNA upstream 1575 7276983 ~ 7279664 (+) False XLOC_003223
TCONS_00006355 mRNA upstream 1681 7276824 ~ 7279558 (+) False XLOC_003223
TCONS_00006359 mRNA upstream 1702 7277070 ~ 7279537 (+) True XLOC_003223
TCONS_00006357 mRNA upstream 1823 7277025 ~ 7279416 (+) False XLOC_003223
TCONS_00006360 mRNA downstream 38394 7324704 ~ 7341807 (+) True XLOC_003225
TCONS_00006361 mRNA downstream 146223 7432533 ~ 7737642 (+) False XLOC_003226
TCONS_00006362 mRNA downstream 242289 7528599 ~ 7736933 (+) False XLOC_003226
TCONS_00006364 mRNA downstream 293769 7580079 ~ 7737642 (+) False XLOC_003226
TCONS_00006363 mRNA downstream 293769 7580079 ~ 7737642 (+) False XLOC_003226
TCONS_00006353 other upstream 6861 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 130333 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 130599 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 130873 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 131157 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006384 other downstream 2612203 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 3981580 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 3985624 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 4059493 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 4086576 11372886 ~ 11373182 (+) True XLOC_003255

Expression Profile

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