RNA id: TCONS_00006360


Basic Information

Item Value
RNA id TCONS_00006360
length 2475
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_003225
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7324704 ~ 7341807 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGGGGGTGAGCCGCATATCGCGTGCTTGCGTGCGTCAGAGAGGACGTGGTAGGACAGCTGGAGCGCGCGCGCCCGCTCGCCTGAAGAGCAataacagcatttttttcagcGACATCGCTCGATTTACGCCATGCAAATAACACGCGAAAATGATACGGGTCTGGCACGGCAGAGAATGTAAGATATTCCTTGTGTATCGGATCTCCTAATGCTTCCTATAATTTATGACTAACAAGATTTGGGACGTTGCAACACAGTCGCCAGATCTCAGGGAATAACTGAGTCTTAAGCAGCAGATACTCCAGCAGATAAACCAGAGCAGCATGCCAGAGCAGAGTAACGATTACCGAGTGGTGGTCTTTGGAGCAGGGGGTGTAGGCAAGAGCTCCCTGGTTCTGCGCTTTGTTAAGGGCACCTTCAGGGACACCTACATCCCAACAGTGGAGGACACGTACCGGCAGGTCATCAGCTGCGACAAGAGCGTATGCACACTGGAGATCACCGACACCACCGGCAGCCACCAGTTCCCGGCTATGCAGCGTCTGTCCATCTCCAAGGGCCATGCCTTCATCCTGGTCTACTCCATCACCAGCAGGCAATCCCTGGAGGAGCTCAAGCCCATCTACCAGCAAGTGCTGGCCATCAAAGGCAACGTGGAGAACATCCCCATCATGCTTGTGGGTAACAAGAGCGATGAGACCCAGCGCGAGGTGGAGACCAAGGAGGGCGAGGCTCAGGCAAACACCTGGAAGTGCGCGTTCATGGAAACATCAGCCAAGACCAACACCAATGTGAAGGAGCTTTTTCAAGAGCTCCTGAATCTGGATAAGAAGCGGGATATGAGTCTGAACATGCGCTCCAGCAAGCAGAGACGGGCAGACAAGCTGAAGGCCAAGTGCAGTGTGATGTAGGAAGCCGCATCTATGGTCGCATCACTCAACTGACTCTTCGAAAATGTACATAAGTCCCTCACTTTAAAGGAAGAGTACGCCCTAAGATAATGGAACTCCTGTCATGATTTGTATGCTGCCGCTTTAAACCTACATgacttatttttcatttttcaagaatTATATTAGCTGTACTCCCATAAACGTTGTTCACAGGACCTGTCAAGTGTATTCCAAATCTCAAAATGGAAAGATCATAACCATATAACTAATTCAGAACGAGTTTGAGAGctgattctttaaaaaaaaaacgatgaaGTTCTTGTATTAACATACTACATTTACTTAAAGTGTAGGTACAGATTACAGTAATGTAACCTTCTGGCAGTTTTAGTCATGGACCACATACAGTACTGTGGTTGTTTAGCACCATAACCATTCTTATATTTCATTTTTGTGATTAACCGAAGAAAGCCATGTATGTTTAAGACGAGTAAACCATGACAGAACGTTCATTTTTGGGCTAACTCTCCCTTTAACTCTCCATTCCTCTCAGTCTTAATCAGGTAGTGTGCATCCAATCCGTCAACCGTCTCCCTTCCCCCCCCCTGTATGTTCTGGCTCCAGAAGTGACTCTGTGTATAAGACTATAAGAGCTGACACATGAAGCAGGGAGGACGTCCCACAATTCTCACACATGCTCTCTTCTCTACAGCTTTCTGTTGACTTTTTACTGAATTCAAGACAGACCAAACCATCAATGTGGCCATTTTTATGTCAGGCAGCTGTGTCTTTAATGGTACAGTGTCGAAACGCTGACGTCTTGAACCGGCTCTACACCGAATTGGATTCTCATCCGAGGAAGTGAACAGGCCCGGGTACAGCTTAAGAGGCGACGCTATCCGCTCTTCCAAATTACATACTACTATAGCAGCACAAAAGCCTACCACAAATCGGAAAACAATTTGGGACGGAGGACATTCTTAGTTAACTGGCTAGCCAGTGATGTAACCTGGTATAACAGAGTAAAGTGCATAATGCATGTCTGATGATATAAACTACCTTCATATTAAATGTGATTGAGATCTTTTCATCGAAAACAGAGCTATACCTTATTGAAGCACAGTGAATAAGTCTTAAATGTGATCATTTcgaaaagcatttttgttttggtgGCAGGGTGGGGGTTTGGGGTGTCGATTGGTGTTTTCTTTTACTCTGGTTTTTCAGGTGTTGATGGCACtcaaaaaccttaatatatgCATTTCATCATCTAACTGAAAACATATATCCTGTATGTGAAATCTGTGTGTATTATCAGCACTAATGAAAGCCCCTGTACAGCCCCTGTTTTTCTGTCGGTGTCTATGTTTCCTCTGATAATTTAATGCCATTTGCTTTAGCAATACACAATATAAAAGCACTTTTAGAATCTTGAGCACATTCAAAACACAGAGCGTAAACCTTTACGAAAATGTTCTTGTCAAACACTCTGCGTTTACAACTTGACtgcagataaagtgtttattcaataaatattatgTGAGGGACCAGAAAAATAAAGAAGCACAAACAAAAGGGAA

Function

GO:

id name namespace
GO:0061551 trigeminal ganglion development biological_process
GO:0048666 neuron development biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5788 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within neuron development and trigeminal ganglion development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in nervous system and otic vesicle. Orthologous to human DIRAS1 (DIRAS family GTPase 1).

Ensembl:

ensembl_id ENSDART00000031937

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008546 lncRNA upstream 38394 7281239 ~ 7286310 (+) True XLOC_003224
TCONS_00006350 lncRNA upstream 105344 7214674 ~ 7219360 (+) True XLOC_003221
TCONS_00008544 lncRNA upstream 172697 7149669 ~ 7152007 (+) False XLOC_003217
TCONS_00006366 lncRNA downstream 378532 7720339 ~ 7722326 (+) True XLOC_003226
TCONS_00006367 lncRNA downstream 440707 7782514 ~ 7783314 (+) True XLOC_003227
TCONS_00008388 lncRNA downstream 483546 7825353 ~ 7826072 (+) True XLOC_003228
TCONS_00008547 lncRNA downstream 538335 7880142 ~ 7954546 (+) False XLOC_003229
TCONS_00006368 lncRNA downstream 538370 7880177 ~ 7971030 (+) False XLOC_003229
TCONS_00006358 mRNA upstream 44445 7277032 ~ 7280259 (+) False XLOC_003223
TCONS_00006356 mRNA upstream 45040 7276983 ~ 7279664 (+) False XLOC_003223
TCONS_00006355 mRNA upstream 45146 7276824 ~ 7279558 (+) False XLOC_003223
TCONS_00006359 mRNA upstream 45167 7277070 ~ 7279537 (+) True XLOC_003223
TCONS_00006357 mRNA upstream 45288 7277025 ~ 7279416 (+) False XLOC_003223
TCONS_00006361 mRNA downstream 90726 7432533 ~ 7737642 (+) False XLOC_003226
TCONS_00006362 mRNA downstream 186792 7528599 ~ 7736933 (+) False XLOC_003226
TCONS_00006364 mRNA downstream 238272 7580079 ~ 7737642 (+) False XLOC_003226
TCONS_00006363 mRNA downstream 238272 7580079 ~ 7737642 (+) False XLOC_003226
TCONS_00006365 mRNA downstream 238348 7580155 ~ 7737642 (+) False XLOC_003226
TCONS_00006353 other upstream 50326 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 173798 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 174064 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 174338 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 174622 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006384 other downstream 2556706 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 3926083 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 3930127 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 4003996 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 4031079 11372886 ~ 11373182 (+) True XLOC_003255

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU281026 True 2626 TUCP 0.42 2 CI01000058 646443 ~ 654949 (-)
eurasian perch (Perca fluviatilis) TU274630 True 6750 lncRNA 0.41 2 NC_053131.1 14044000 ~ 14051258 (-)