RNA id: TCONS_00006365


Basic Information

Item Value
RNA id TCONS_00006365
length 6374
RNA type mRNA
GC content 0.47
exon number 19
gene id XLOC_003226
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7432533 ~ 7737642 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCGGAAAGCAGAAAGTCCAGTCAGAGCCAGGATGGGCTGCTCAGAATGGAAGTCTTTGGTCCTTTGTGGCCTTGTATTCGTCTTGACGGTTGTGCAGAGTTCTGACGGGTTTAGCCGGGCAGCCATGCCATTTGGCCTGGTGAGGCGGGAGCTGTCATGTGAGGGTTATCCCATCGACCTACGCTGTCCAGGAAGTGATGTCATCATGATCGAGACTGCTAATTACGGTCGGACAGACGACAAGATCTGTGATGCTGACCCCTTTCAAATGGAGAACATCAACTGCTATCTGCCTGATGCGTTCAAGATCATGTCCCAAAGGTGTAACAACAGAACACAATGCATTGTCATCACTGGACCAGATGTTTTTCCCGACCCTTGCCCAGGAACTTATAAGTACCTTGAAGTCCAGTATGAATGTGTTCCCTACATTTTTGTTTGTCCTGGAACTCTGAAAGCGGTTGGAGATCCGTCGTTTCTATACGAAGCGGAGCAACAAGCGGGGTCGTGGTGCAAAGACCCTCTCCAGGCTGGGGACAAGGTTTATTTCATGCCCTGGACCCCTTACAGAACAGATACACTTATTGAGTACAACTCGCTCGATGATTTTCAAAACTCTCGACAGACTACGACGTATAAACTACCCCATCGGGTCGATGGCACGGGATTTGTGGTATATGACGGAGCGGTGTTTTTTAACAAGGAGAGGACACGTAACATTGTCAAATTTGACCTTCGGACTAGAATTAAAAGTGGGGAGGCGATTATAAATAACGCAAACTATCATGACACTTCGCCGTATAAGTGGGGCGGGAAAACAGACATTGACTTGGCGGTTGATGAAAATGGCCTCTGGGTGATCTACGCCACCGAGCAGAACAACGGTATGATGGTGATCAGCCAGCTCAACCCCTACACCCTCCGCTTTGAGGCCACCTGGGAGACCACATACGACAAGCGGTCGGCCTCCAACGCTTTCATGATCTGCGGAGTTCTCTATGTGGTGCGATCCACCTACGAAGACAACGAAAGTGAGGTCAGCAAGAGCCTGATCGACTACATGTACAACACCAAACTGAACCACGGCGAATACGTCGACATCCACTTCCCCAACCAGTACCAGTACATAGCCGCTGTGGAGTACAACCCCAGGGACAACCAGCTCTACGTGTGGAATAACTTCTACATTCTGCGCTACAATCTGGTGTTTGGGCCACCTGATCCAGCTCACGCACCACCTATATCAGAAGCATCCACATCGCCAAAGGTACTCAAACCAACAACCACTACCACAACCACTACTCAGCCCAAAGGCCAAGTGACTACTATCACCACTACAGGGACCAGAGCTGTTAATAAGACCCCCAAATCACCACCTGTACTTCCCCAAACCACCACGCCACCCTCACTGGAGTCGTTTCCTCCACCTGAGCGCTTCTGCGAGAGCGTAGAGCTCAGGGACATACTGTGGCCGCAGACGCAGAGGGGCATGCTGGTGGAACGACCCTGCCCCAAAGGAACCCGAGGCACTGCCTCCTACCTCTGTGTTCTCTCCACTGGGACCTGGAACCCAAAAGGGCCAGATCTGAGCAACTGTACATCCCACTGGGTAAATCAAGTCGCACAAAAGATCCGAAGTGGGGAAAACGCAGCCAACCTGGCGAACGAGCTGGCCAAACATACCAAAGGAGCCATCTTTGCTGGTGACATTAGCTCTACCATGAGGCTCATGGAGCAGCTGGTGGATATCCTAGATGCTCAGTTACAGGAACTGCGACCCAGCGAGAAAGACTCCACCGGCCGCAGCTTCAATAAGGCTATCGTGGATACAGTCGACAACCTCCTCAGACCGGAGGCTCTGAAATCGTGGCGAGATATGAATACCACGGAGCAGACGCACGCCGCAACCATGTTACTGGACACCCTGGAGGAAGGAGCCTTTGTCCTTGCTGACAATTTAATGGAACCAGCCATTGTGAAAGTACCAGCCAGTAATATAATTCTGGATGTTTACGTGCTGAGCACAGATGGGCAGGTTCAAGATTTCAGGTTTCCCCAGAGTGGCAGGGGTGGTATTTCTATCCAATTGTCTTCCAATACGGTGAAACTCAACAGTCGTAATGGTGTTGCCAAGTTGGTGTTCGCCCTTTATAAGAACCTGGGGCAGTTTCTAAGCACTGAGAATGCAACAATGAAACTCGGCCAGGAGGTCAACGGACGCAACCTCTCGGTGGCTGTGAATTCTGACGTCATCGCCGCATCAATAAACAAAGAATCCAGTCGTGTATTTATATCGGAGCCTGTGATTTTCACCCTGGAGCACATCGACATGCAGCATTACTATAACTCCAACTGCTCGTTCTGGAACTACTCGGAGAGAACCATGATGGGATACTGGTCCACTCAGGGCTGCAAACTCATCCACGCCAATAAAAGTCACACCACATGCTCCTGTAGTCATCTCACCAACTTTGCCGTGCTCATGGCTCATCGAGAGCTGCTGGGTGCCGACAAAGTCCAGGAGCTGTTGCTGAGTGTTATCAGTCGTGTGGGTATTGTAGTATCCCTCATCTGCCTGGCCATGAGCATCTTCACCTTCTGTTTTTTCCGTGGACTGCAGAGTGACAGGAACACAATCCACAAGAACCTGTGCATCAATCTTTTCATAGCTGAGCTCATCTTCCTCATCGGAATCGACATGACAGAACCTAAGTTGGCCTGCTCCATAATCGCAGGGATACTGCATTACTTCTTTTTGGCGTCCTTTGCCTGGATGTGTCTGGAAGGAGTTCAGCTGTATCTGATGCTGGTGGAGGTCTTTGAGAGTGAATATTCACGCAGGAAATATTTCTACATGGCAGGATACCTTCTCCCCGCTGTGGTTGTGGGAGTGTCTGCTGCTGTAGACTTCAGGAGCTACGGGACTAAGAAAGCATGCTGGCTCAGGATGGACAATCACTTCATCTGGAGTTTCATTGGACCCGTCACCTTCATTATTATGCTCAATCTCATCTTCCTGCTCATCACGATGTACAAAATGATGAAACACTCTACATCGCTGAAACCCGATTCCAGCCGGCTGGAGCACATCAAGTCGTGGGTCATGGGCGGCTTCGCTCTGCTGTGTCTTTTGGGCCTGACCTGGTCATTTGGTTTGTTCTTCATCAGCGAGTCCTCCGTGGTCTTAGCATACCTCTTCACCATTTTCAACACTTTTCAAGGCATGTTTATCTTCACCTTCCACTGCCTCCTTCAAAAGAAAGTACGGCGAGAGTACAGCAAATGCCTCCGACACACGTACTGCTGTAGCAGGATCACGACAGAGAGCTCGCACAGCTCCACAAAGACCTCAACAACACGGACAAGCGCTCGCTACTCCTCTGGTACTCAGAGTCGAATCAGGAGAATGTGGAATGACACAGTCAGAAAACAGTCTGAATCCTCTTTCATCTCAGGAGATATCAACAGCACATCAACCCTCAACCAAGGACACTCGGTGACCAGCGGCAGAGATACGAACACGTTCGGTACTCTACCACTCAACGGCAACTTTAATAACAGCTACTCACTCCATAACTACAGCGACGGCATGCAGGTGGTGGACTGCGGGCTCAGTCTCAACGACACAGCCTTTGAGAAGATGATCATCTCCGAGCTTGTGCACAACAACCTCAGGGCCGCCGAGTCCCGGATCGGTACCAAAAAGGGGGCAGGGATTAGCAGAGGGGAGGAGCCTGTGGTTGCAGAGACGTCCTCCCTGGTGCAGGTGGGCGGTGACAGTGAGATGGAGAGACTGGGGCTGCACCACACGCATCCCCGCACACTCGAAGCCCCCCTAATCCCCCAGCGAACTCACTCGCTCCTGTACCACACGCAGGAGAGAGCGAGGCCTGAAGCGGAGGCTTCGCATCCCCAGAGCTACATAGGCCAGCTCCCACCTCCGGCCGAAACTGCCCTGCCTTCCCCCAACAGAGACTCGGTGTACACCAGCATGCCAAACCTCAGAGACTCGCCGTTTTCGGAAAGCAGCCTAGACATCGTCCAGGATCTCTCGCCATCCAAAAACAGTCCGAACGAAGACGTTTACTACAAAAGCATGCCCAACCTGGGATCAGGCCAGCAGCTGCACGCGTATTATCAGATGAGCAGAGACAGTAGCGAGGGCCTCATCATCCCCGTCTCTAAAGACGCCTGTGTCCCCGAGGGGGACGTACGAGAGGGACAAATGCAGCTGGTCACAAGCCTTTAAAAACAAACTATAAGCACCGCCCACCATGTACACAGCCCCGCCCATCCACCGATGGCAGAGTGGTCTTCCCTTTTTTAGCCTCCCACATAACTGCACACATAATGGAGAAGTACCGCTGCTGCTCAATGAGTTACATTCAGgcccagatggaatctgcagactTATTGCGTTAGCTCTCCTGATTGTTAGCAGTGGAATgaaaatgatggtaaaacacaaagCTTTTCCCTTGTTTTTCAGTAAAAAAACGTCTACACCTCCTTTAAACAAGTTTACTTGAGCAGtcatttaagaaacatttcaatACTTTCTCAAAGCAAAGACGCTGTTTCTCAAACAAATATGCTTTCCTGGAAAACAAGGAAGAATAATAGgatcattttcatttgttttggttGCTGAGTGTAATCAAAAATCTAATTAGCCacagttatttaataaatacacatacaagAGTCAGATTATATGTACAGTAGAACTTGTGAATGGGGGATTTCCAGTTTTATGCCGAAATCTGTGGTGTTCTGAAGTTGTAGATTCTGTATGGGCCTGGTTACAGTAATACagtttcacataaaaaaataaataaataaagccaaaaaaaaaaaaagtctttctcgTTCCAGTGCATACATTTCTCAAAGGATGTACATATTTGTTCACATATTTCTCTTTTGAATgcagtttcttttttattattattattattattattattattattattattattatatacaaaaaCTGAATTTCCAGGATATTGTCCTGACTGAACTGAAGCATTTCTTTTGACACCCTTTACAATCATCAACAAAATCCCATGTGACCACTAGCGAACAAACCCCAGGCCTTATATTTTCTCAATCTGACATGAACTGTCAAGGTTAATGATATAACATAGaacaatatattttgttgtattgattgtgtaaaaataaattgAGATGAAATTATAACAACCCTAAATATAAAGCAAATGAATTTTCGAAATGAGATGACTATGTAAAAAGTGTGTTTATGATGATGCAATCAGTGGGTAACCACAGGTACGCTGCGGAAGATATCTGTTGTGCTCATTTAAATGGATTTGCCACTTCAGATCAGTGAGTGTTAGTGGATTCTGATGTTCTTGTGCTTTgcacatatttattttgtgcaaaGCATGAAcgggacattttttttaaagacgtATTACTGCAGTCGGGgttggatatttatttattaaattattctttaaaaaaatgataatacttTTTGTGAATATTTTACAGCACTGGTCGACGTAGTTCATCCTCGTAAGCATAATTAAGAAACCCATCTCTGATAAACATGTTAAGGAGCCCATCGCTACAAAGGATGTAAAGTTCTACACttgtttaacaataaataaatgtgaatttttttgtCTAATCGAATGTTTAATGCTTTGTTTTTTCTACTCGCATGCCttcagttcaagagttcacacttagctgattgattataaagcttgtttagcaAGCTGTCCTGTGAAAGAGcccctaagctcataagatcctcgagcccgggggtccctcctgtttgcaaggcgagaggggtgTTTGTGCTCAgtttcgagaactcccctgctgtagtagctaataaacagatagtgattgctcttatgAGATAACTACTTACTTGGAGCAtgactatggtgctgatttggattagtcaattaacttaagctgaatgtttttggatggtgggaggaacccaggggaaacccatgtgagcgcGGGGAGACTGTGTAAACTCCGCACTGAaacattggctggcttggtaaggactagaaccagtgacgttcttgctgtgaggcaacagtgctaaccactgggccaccgtgccactctTTTAGGAAACGAGGAGGAGTatggaaggagggattcttcaaaacgaagatggctgtgatatagTACCTagcgcagtggttctcaaacttttttcatcaagtaccacctcagaataaaatagtctctccaagtaccaccaaaatgagcagtattgaaatacagtttaGCGTAGTagacccagtaaagcagctacaactctgcacagttaaaaataaaacatggcagattacctcagatatataggctatatgt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0007420 brain development biological_process
GO:0007165 signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0043005 neuron projection cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000607-49 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and brain development. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in axon and membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in brain; eye; and tail bud. Orthologous to human ADGRL2 (adhesion G protein-coupled receptor L2).

Ensembl:

ensembl_id ENSDART00000193386

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008546 lncRNA upstream 293845 7281239 ~ 7286310 (+) True XLOC_003224
TCONS_00006350 lncRNA upstream 360795 7214674 ~ 7219360 (+) True XLOC_003221
TCONS_00008543 lncRNA upstream 428148 7149669 ~ 7152007 (+) False XLOC_003217
TCONS_00006367 lncRNA downstream 44872 7782514 ~ 7783314 (+) True XLOC_003227
TCONS_00008388 lncRNA downstream 87711 7825353 ~ 7826072 (+) True XLOC_003228
TCONS_00008547 lncRNA downstream 142500 7880142 ~ 7954546 (+) False XLOC_003229
TCONS_00006368 lncRNA downstream 142535 7880177 ~ 7971030 (+) False XLOC_003229
TCONS_00008548 lncRNA downstream 169365 7907007 ~ 7954546 (+) True XLOC_003229
TCONS_00006360 mRNA upstream 238348 7324704 ~ 7341807 (+) True XLOC_003225
TCONS_00006358 mRNA upstream 299896 7277032 ~ 7280259 (+) False XLOC_003223
TCONS_00006356 mRNA upstream 300491 7276983 ~ 7279664 (+) False XLOC_003223
TCONS_00006369 mRNA downstream 391894 8129536 ~ 8149796 (+) False XLOC_003230
TCONS_00006370 mRNA downstream 392038 8129680 ~ 8150894 (+) True XLOC_003230
TCONS_00006371 mRNA downstream 415230 8152872 ~ 8157495 (+) False XLOC_003231
TCONS_00006372 mRNA downstream 415240 8152882 ~ 8157035 (+) False XLOC_003231
TCONS_00006373 mRNA downstream 415326 8152968 ~ 8161149 (+) True XLOC_003231
TCONS_00006353 other upstream 305777 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 429249 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 429515 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 429789 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 430073 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006384 other downstream 2160871 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 3530248 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 3534292 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 3608161 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 3635244 11372886 ~ 11373182 (+) True XLOC_003255

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00004863 True 3078 mRNA 0.49 17 CM030140.1 7190355 ~ 7219055 (+)