RNA id: TCONS_00008388


Basic Information

Item Value
RNA id TCONS_00008388
length 720
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id XLOC_003228
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7825353 ~ 7826072 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aatagacataattaataataataacatctaaagatgtcaatcttggtgggttttttttttcaaacacaactaattttgtcctaaatgagcataaacagttaggaaagcaatcgattgctttcattataacgttagatgtgcgCATTATTAAAGTGACACATCtgttatttaattcaatcaaacaaaaaaatcttaataaatgaaatccattcgttgctctttaatcagaatgtgtaagttatacagtgaaaaaagattaatgagatttgataacttgatcccttcttatggtgggcatatcccttatttttatccaagctttcatgttgttgatgccaaattctgatcctaccatcaGAATGTCGCAGCAGACATTGAGATTAATCAGACCAAGCAACGTTTTCCCAATTTTcttttgtctaattttggtgagcctgtgccaattgtggcctcagtttcctgttcttagctgacaggagcagcacccggtgtggtcttctgctgttgtaacCCATCCGTCTGAAGGTTTGgcatgttgtgcatttagagatgctctaccttggttgtaacgagtggttctttgagttactgttgcctttctgttgCCAggttgaaccagtctggccattctcctctgtcttctagcatcaacaaggtatCTGCGCCTAAAGAACTGCCGTTtgctggatattttttctttttcggaccattctctgtaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006367 lncRNA upstream 42039 7782514 ~ 7783314 (+) True XLOC_003227
TCONS_00006366 lncRNA upstream 103027 7720339 ~ 7722326 (+) True XLOC_003226
TCONS_00008546 lncRNA upstream 539043 7281239 ~ 7286310 (+) True XLOC_003224
TCONS_00006350 lncRNA upstream 605993 7214674 ~ 7219360 (+) True XLOC_003221
TCONS_00008545 lncRNA upstream 673346 7149699 ~ 7152007 (+) False XLOC_003217
TCONS_00008547 lncRNA downstream 54070 7880142 ~ 7954546 (+) False XLOC_003229
TCONS_00006368 lncRNA downstream 54105 7880177 ~ 7971030 (+) False XLOC_003229
TCONS_00008548 lncRNA downstream 80935 7907007 ~ 7954546 (+) True XLOC_003229
TCONS_00006379 lncRNA downstream 751982 8578054 ~ 8580557 (+) True XLOC_003234
TCONS_00008549 lncRNA downstream 849897 8675969 ~ 8677720 (+) True XLOC_003235
TCONS_00006361 mRNA upstream 87711 7432533 ~ 7737642 (+) False XLOC_003226
TCONS_00006369 mRNA downstream 303464 8129536 ~ 8149796 (+) False XLOC_003230
TCONS_00006370 mRNA downstream 303608 8129680 ~ 8150894 (+) True XLOC_003230
TCONS_00006371 mRNA downstream 326800 8152872 ~ 8157495 (+) False XLOC_003231
TCONS_00006372 mRNA downstream 326810 8152882 ~ 8157035 (+) False XLOC_003231
TCONS_00006373 mRNA downstream 326896 8152968 ~ 8161149 (+) True XLOC_003231
TCONS_00006353 other upstream 550975 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 674447 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 674713 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 674987 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 675271 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006384 other downstream 2072441 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 3441818 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 3445862 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 3519731 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 3546814 11372886 ~ 11373182 (+) True XLOC_003255

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU245771 True 287 lncRNA 0.41 1 NC_053129.1 652514 ~ 652800 (+)
striped catfish (Pangasianodon hypophthalmus) TU245771 True 2678 lncRNA 0.39 3 NC_047607.1 7943678 ~ 7948171 (-)