RNA id: TCONS_00006368


Basic Information

Item Value
RNA id TCONS_00006368
length 625
lncRNA type lincRNA
GC content 0.44
exon number 3
gene id XLOC_003229
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7880142 ~ 7971030 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGCTGAATATCTGTCCATCCTGCTTGGAATAACAATCACTATTACAAGGTCAGAGcagttttaatgtatttatttcatttctcaGGGatccTGCCAACTGCTCTTTGGACGTCTGATGACCATACTGTGTCTGATTGTTGGATGACAGCTTAACTATTTCTTCAGTTCGCTCAGTCCACTGGGAATGTTAAGGGCCCCGAGCGCTCCAATATTTGGAAGTGAACAAAAACTTCCCTTGTGAGCCTGGAAAATGTTTATCATCACAGTCAAAGGCTTGGCTCTCCGTCATGGCGTTCTGCCGCTGATGGAGAAGGTAGTTTGGTATGACGGAGACAGCTGTGAAGTCTCTTTTTAAGAGGAAGCTGTTGTAGGCCAGCTCACACCTGTAACATGTCACTCAAGGACTGTCAACACAAATAACGCTCATTAATCATGTTTATAAAAGCATTAATCTCACGGCTGGGTGGATAAAATGTGTTTTTCCACTGTCGCTCGGTGAGGAATTAAGACCGGGGTGAGAAAGCCAGGAGAGAAAGTACGGAGATGTCtaaggttttttttgtttttttcttgacaGGAAGACGTTTGCATTCTCCTGCGGGCATCAACTCCCTCTTGAGTAA

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000164240

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008388 lncRNA upstream 54105 7825353 ~ 7826072 (+) True XLOC_003228
TCONS_00006367 lncRNA upstream 96863 7782514 ~ 7783314 (+) True XLOC_003227
TCONS_00006366 lncRNA upstream 157851 7720339 ~ 7722326 (+) True XLOC_003226
TCONS_00008546 lncRNA upstream 593867 7281239 ~ 7286310 (+) True XLOC_003224
TCONS_00006350 lncRNA upstream 660817 7214674 ~ 7219360 (+) True XLOC_003221
TCONS_00006379 lncRNA downstream 607024 8578054 ~ 8580557 (+) True XLOC_003234
TCONS_00008549 lncRNA downstream 704939 8675969 ~ 8677720 (+) True XLOC_003235
TCONS_00006381 lncRNA downstream 1540503 9511533 ~ 9520179 (+) False XLOC_003236
TCONS_00006383 lncRNA downstream 1540503 9511533 ~ 9522073 (+) False XLOC_003236
TCONS_00006382 lncRNA downstream 1540503 9511533 ~ 9522073 (+) False XLOC_003236
TCONS_00006361 mRNA upstream 142535 7432533 ~ 7737642 (+) False XLOC_003226
TCONS_00006369 mRNA downstream 158506 8129536 ~ 8149796 (+) False XLOC_003230
TCONS_00006370 mRNA downstream 158650 8129680 ~ 8150894 (+) True XLOC_003230
TCONS_00006371 mRNA downstream 181842 8152872 ~ 8157495 (+) False XLOC_003231
TCONS_00006372 mRNA downstream 181852 8152882 ~ 8157035 (+) False XLOC_003231
TCONS_00006373 mRNA downstream 181938 8152968 ~ 8161149 (+) True XLOC_003231
TCONS_00006353 other upstream 605799 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 729271 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 729537 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 729811 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 730095 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006384 other downstream 1927483 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 3296860 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 3300904 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 3374773 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 3401856 11372886 ~ 11373182 (+) True XLOC_003255

Expression Profile

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