RNA id: TCONS_00006371


Basic Information

Item Value
RNA id TCONS_00006371
length 1341
RNA type mRNA
GC content 0.40
exon number 5
gene id XLOC_003231
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 8152872 ~ 8161149 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACATTACCCATGAACCCCTGCGTCTGCATTTGTTGGATTGTACTGGAAAAAAGCGTAATATTGTATCAATGATCTTCAACCAGTAATATTAACACCATCTacataaaacatctaaaaaaattgTGTTTTGCAGCTACCACAACAATTATTCATAAACTTGGAGGTCTACTATACATGTTTATCGACAATGGGGTCAGTTTGGCACAGCGGGAGACTGAAGAAGATGGCATGAGCAGCACAAGAGGATAGAACACCTTTAATGGAATAGAGCAGCCTCATCTTTCTGACAAACAGCAGTCATGGAAACCAAGGAAAATGGTTCAGTGGAGACCAAAAATTCTGTGGAGAATGGGCAGCTTACTGATCCAGCCCACTGGGCCGTAGCGGATGTGGTCAATTATTTTAAAGCGACAGGGTTTGAGGAGCAAGCCAACGCTTTCCAGGATCAGGAAATCGACGGCAAATCCCTTTTATTAATGACTCGTAACGACGTTCTGACCGGACTTTCGATAAAACTGGGTCCTGCACTGAAGATATACGAGTATCATGTCAAGCCTCTCCAAACCCAACACTTAAAAAGTAACGTCTCGTAGCCGCTGCCGCTGCGTGGACACACGGAAGACAATCACAGCAGGGTAACTGCAGACAAAACTAACACACATTTGATGCATCttgaagaaaaacacacacacacacacatggtgaaTTATTGCTTTTAACGCCTCGTTCAGCATTACAGGCACACTTACTGTTTTCACTTTACCTTTGTTTAATAGTGTGTTCGTTCGGGTTTTGATTTTGTGTGCTTGTACATAACTCATTATTGCTTTTAAGGTTAAATTCTTACTTTAATAAAAGTGAACTGTGATgtaaaattggagaaaaaaaaaatgaaactcgACCCTTAAAGATGTTTCAGTGTAACGCGTGATGAAGTTTAATTGAAGAGGGACATTCATGTCACAGTTGATTTGATGGTTTGTTGGTGGTTgctttcctttttgttttttccaGTTTTTAACAATCTGTTGATATACAAACTGATCGGATGTTCTGAAAATGATAGATTTGCTGTGGTTTACAGCTATAAAGGCTCAACGGATGACGGGTTTGTTTGCAGGAATGCTGCCGGGATGACAGGCCTTTGTGCTgttataaattctgtttatttatttaattctgtaaCTAACAGTGTGATTCCTAATGGATTGGTGAATTGTTGTTGTTGACAGATACGCTGCGACTCTGAAGCAGCTTGTGATACAGGGTGTTTTAAAAAGGTGAAACGAATGTGAGTGTAGCCTGCAATAAATGGTGCTTTTTCAGATTGCTGAAAAAAA

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-676 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD13 (sterile alpha motif domain containing 13).

Ensembl:

ensembl_id ENSDART00000091638

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006368 lncRNA upstream 181842 7880177 ~ 7971030 (+) False XLOC_003229
TCONS_00008547 lncRNA upstream 198326 7880142 ~ 7954546 (+) False XLOC_003229
TCONS_00008548 lncRNA upstream 198326 7907007 ~ 7954546 (+) True XLOC_003229
TCONS_00008388 lncRNA upstream 326800 7825353 ~ 7826072 (+) True XLOC_003228
TCONS_00006367 lncRNA upstream 369558 7782514 ~ 7783314 (+) True XLOC_003227
TCONS_00006379 lncRNA downstream 420559 8578054 ~ 8580557 (+) True XLOC_003234
TCONS_00008549 lncRNA downstream 518474 8675969 ~ 8677720 (+) True XLOC_003235
TCONS_00006381 lncRNA downstream 1354038 9511533 ~ 9520179 (+) False XLOC_003236
TCONS_00006383 lncRNA downstream 1354038 9511533 ~ 9522073 (+) False XLOC_003236
TCONS_00006382 lncRNA downstream 1354038 9511533 ~ 9522073 (+) False XLOC_003236
TCONS_00006370 mRNA upstream 1978 8129680 ~ 8150894 (+) True XLOC_003230
TCONS_00006369 mRNA upstream 3076 8129536 ~ 8149796 (+) False XLOC_003230
TCONS_00006361 mRNA upstream 415230 7432533 ~ 7737642 (+) False XLOC_003226
TCONS_00006374 mRNA downstream 13453 8170948 ~ 8179145 (+) False XLOC_003232
TCONS_00006375 mRNA downstream 13573 8171068 ~ 8178949 (+) True XLOC_003232
TCONS_00006376 mRNA downstream 407828 8565323 ~ 8678905 (+) False XLOC_003233
TCONS_00006377 mRNA downstream 407960 8565455 ~ 8681905 (+) False XLOC_003233
TCONS_00006378 mRNA downstream 408333 8565828 ~ 8674489 (+) False XLOC_003233
TCONS_00006353 other upstream 878494 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 1001966 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 1002232 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 1002506 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 1002790 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006384 other downstream 1741018 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 3110395 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 3114439 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 3188308 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 3215391 11372886 ~ 11373182 (+) True XLOC_003255

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU281402 False 116 lncRNA 0.36 1 CI01000058 1265394 ~ 1265509 (+)