RNA id: TCONS_00006374


Basic Information

Item Value
RNA id TCONS_00006374
length 1363
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_003232
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 8170948 ~ 8179145 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGTCTGTCATGAgacacacttcctcttttttacacTACGGTAGCTGCTCGGAACTAGAGAAAACGTCTCTCTTTCTGTTGTCATTCAAACAGGAAGCTTAGACAATTTCCAGACAGAAatgtttgtgttgtttcaactttcTGCGTGCTGCTTGTTGTTTTTGATGGGTTTCTCGGAGGCAGTGATATCCTGCTTAAATGAGGATGGTCAGCCGGTGGACTGGTTTATTATGTACAAACTTCCCATTTACAAGATGGAGGTTAAGGGAAGCGGAGTAGACTACATGTATCTGGACCCATCCATCATGGATTTTCAGATAAGTAAATATACAGTCAACAGCAGTACTGGAGCTTTAGGAAGAACATTGACACAGCTCTACTCTGGCTATACATCCAACAGCTCAGTGTATATGCTTTACAATGATGCTCCACCAGAACTGAAGTACCCAAGCAAGTACGGACATACAAAAGGGGTGCTGATGTTCGACCAGGATCAGGGATTCTGGCTCACACACAGTGTTCCTCATTTTCCTCCGTTCCCAGAAAGAAACTACAGCTACCCTCTCACAGGAAAATACTACGGACAGACTTTGCTCTGCATTACATTCAACTATACACAATTCCCTCGTATATCATGGCAGTTAGCGTATCTAAATCCACGTGTGTATAATTGCTCTGTCCCTGTGGCGTTTCGCCCCGATATTGGAGAAATGGCACAAATTTGTGATGGAAAGACACCTGCCATAAAAAACAGGAGGAGTTTGCAAAAGCTGCAGTCAGTTCAAGGACAGACGTTTTTCAGTTTTGCCAAATCACAGAACTATGTGGATGATATTTACACAGGCTGGGTTGCTCAAGCACTAGGGACAGATCTACTGGTGGAATCATGGCTTCACCAGGCTCATCAACTCCCCTCTAACTGCTCCCTACCCTGGCACGTGATGAACATTAACGCGGTCTGTCTACCCGGACCTCAGATGTTCAGAAGCTATGAGGATCATTCTAAGTGGTGTGTGTCTTACACTTTTAAAGACCAGTGGACATGCCTGGGGGACTTGAACAGAGATGGTGGTCAGGCTGGCAGAGGTGGAGGGTTAACATGTTGTCAAAACTCAGTTATTTATAAAGCTTTCCGTAAGGCCATGGCCAGATATAAACACTGCTGAAAAATACAGCACTGAGCAGCTCTGGACATGTATTGCTCAATGCAAGGGATTTTAACCCCTGGATGAAAACCTGCAGGTAATACAGTTTAACAACAAGACAGTGCAGAGTTAaacataaatgagtacagcccatgttcatttattttttttttttttggctcagtccctttattaatcattggtcgccacagcggaa

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0004531 deoxyribonuclease II activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090824-2 Predicted to enable deoxyribonuclease II activity. Predicted to act upstream of or within DNA metabolic process. Is expressed in several structures, including digestive system; gill; immune system; integument; and retina. Orthologous to human DNASE2B (deoxyribonuclease 2 beta).

Ensembl:

ensembl_id ENSDART00000112127

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006368 lncRNA upstream 199918 7880177 ~ 7971030 (+) False XLOC_003229
TCONS_00008547 lncRNA upstream 216402 7880142 ~ 7954546 (+) False XLOC_003229
TCONS_00008548 lncRNA upstream 216402 7907007 ~ 7954546 (+) True XLOC_003229
TCONS_00008388 lncRNA upstream 344876 7825353 ~ 7826072 (+) True XLOC_003228
TCONS_00006367 lncRNA upstream 387634 7782514 ~ 7783314 (+) True XLOC_003227
TCONS_00006379 lncRNA downstream 398909 8578054 ~ 8580557 (+) True XLOC_003234
TCONS_00008549 lncRNA downstream 496824 8675969 ~ 8677720 (+) True XLOC_003235
TCONS_00006381 lncRNA downstream 1332388 9511533 ~ 9520179 (+) False XLOC_003236
TCONS_00006383 lncRNA downstream 1332388 9511533 ~ 9522073 (+) False XLOC_003236
TCONS_00006382 lncRNA downstream 1332388 9511533 ~ 9522073 (+) False XLOC_003236
TCONS_00006373 mRNA upstream 9799 8152968 ~ 8161149 (+) True XLOC_003231
TCONS_00006371 mRNA upstream 13453 8152872 ~ 8157495 (+) False XLOC_003231
TCONS_00006372 mRNA upstream 13913 8152882 ~ 8157035 (+) False XLOC_003231
TCONS_00006370 mRNA upstream 20054 8129680 ~ 8150894 (+) True XLOC_003230
TCONS_00006369 mRNA upstream 21152 8129536 ~ 8149796 (+) False XLOC_003230
TCONS_00006376 mRNA downstream 386178 8565323 ~ 8678905 (+) False XLOC_003233
TCONS_00006377 mRNA downstream 386310 8565455 ~ 8681905 (+) False XLOC_003233
TCONS_00006378 mRNA downstream 386683 8565828 ~ 8674489 (+) False XLOC_003233
TCONS_00006380 mRNA downstream 481013 8660158 ~ 8682447 (+) True XLOC_003233
TCONS_00006386 mRNA downstream 2362113 10541258 ~ 10550377 (+) False XLOC_003240
TCONS_00006353 other upstream 896570 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 1020042 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 1020308 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 1020582 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 1020866 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006384 other downstream 1719368 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 3088745 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 3092789 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 3166658 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 3193741 11372886 ~ 11373182 (+) True XLOC_003255

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000058_01280337_01289153.mRNA False 3717 mRNA 0.35 9 CI01000058 1278592 ~ 1289874 (+)