RNA id: TCONS_00006377


Basic Information

Item Value
RNA id TCONS_00006377
length 2691
RNA type mRNA
GC content 0.48
exon number 17
gene id XLOC_003233
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 8565323 ~ 8682447 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCCTATTCACTGAATAACAATCAACATTTATAACCTTATAAAAGATCTCAAATGATAAATCTGGCCATATCATAATGTCTAATATAATctcttttaattgcatttttacaacATAAACAATCTCCATTCGCGTGTCAAAACGAGTCCCGCGCATCATAATAAAGATTGTAAGTCGCTAAAATGATATACCTCTTCCGCAGTTCACAGTAAAATCCAGATTGAAATGGAACGAAGAGGCATGTTATTGCGATATTCCTCCTTCAGTTTCAACAAAGCTGCATAGACAACCGCCCAGGCCTCCCCCATTTTCGCCTGGAAAGTCACCTCTCCAGTGTTTGAGTGTCTGAAGCCGTTGGCTGCTCCTGAACCGTTTGGCTCTTTCTCCACTAGCAAACAGCCCCACAATGTACCTCAATCGCtcttaaatctatttttaaacGATTTTATTCCGCTCTACGCCGATGCGAACGGGACCGGACTGTTGTTTGGGAATTTATCTGAAGACTTGCCGCCTCAAAGCAGCTTTATAACGCTTTGTTTGAGCACTATTTGACAAAATAGTCGAGGAGGAGGAAATTCCACACAAGCAGTGAAAGGCAGTCCTCGCGTTCATCCGGGTATTAAAgTCCAGGCTGTAGAGACTCCTTCGCTCCTAAGGGTTCAAATTGGAGCAAGACCAGATCACATGGTGCTGAGACACTTGGGTTGGATTCTTAAAAAGCGTTTGCCTTGCGGAAATAGAGCTGATAGTGTGGCTAGTGTCCTGTGTGCTGACCTCATGGTGTAAGCAAGTGTGAAGATGAGTATTAGCAGCGATGAGGTCAACTTCCTGGTGTATAGATACCTGCAGGAGTCAGGGTTTTCCCACTCGGCCTTCACATTCGGCATTGAGAGCCACATCAGCCAGTCGAACATCAACGGCGCCTTGGTGCCCCCTGCTGCCCTAATCTCCATCATTCAGAAGGGCCTGCAGTACGTGGAGGCTGAAGTCAGCATCAATGAGGACGGCACTCTGTTCGATGGGCGGCCAATTGAATCACTGTCATTGATTGACGCGGTGATGCCCGATGTGGTACAGACCCGGCAGCAGGCGTACCGAGACAAACTGGCTCAGCAGCAGGCCGCCGCAGCGCCATCAGCAACCAGCGCTAACATGCAGGGGAATGCCAAAAACGGAGAAAACACCGCAAACGGAGAGGAGAACGGTGCTCACGCCTTACCTAATAACCATGCAGACATGATGGAGGTGGACGGGGATGTGGAGATCCCTCAGAATAAAGCCATGGTGCTTAGAGGTCACGAGTCAGAGGTCTTCATCTGCGCATGGAATCCCGTCAGTGATCTGCTCGCCTCTGGGTCAGGAGACTCAACGGCACGAATCTGGAATCTGAGCGAGAACAGCAGTAGTAGCTCCACACAGCTCGTCCTGAGGCACTGCATACGGGAAGGTGGCCAAGACGTGCCCAGCAACAAAGACGTCACATCGTTAGACTGGAACAGTGAAGGTACACTTTTAGCCACAGGCTCCTATGACGGCTTTGCAAGAATATGGACTAAAGATGGTAATCTGGCCAGCACCCTAGGTCAACATAAAGGTCCAATATTCGCGTTAAAGTGGAACAAAAAAGGAAACTTTATCCTCAGTGCCGGTGTTGATAAGACAACAATCATTTGGGATGCTCACACAGGGGAGGCCAAACAGCAGTTCCCGTTTCATTCAGcacCAGCTCTAGATGTGGATTGGCAGAGTAACAACACGTTTGCCTCCTGTAGCACAGACATGTGCATTCATGTGTGCAAACTGGGCCAGGACCGACCCATAAAGACATTTCAAGGACACACAAATGAAGTTAATGCAATCAAATGGGATCCGACTGGTAATTTGTTGGCGTCGTGTTCTGATGACATGACTCTGAAGATTTGGAGTATGAAACAGGACACTTGTGTTCATGATTTGCAAGCTCACAGCAAAGAAATCTATACTATCAAATGGAGCCCCACAGGTCCAGGAACCAACAACCCCAATGCCAATCTAATGCTGGCCAGTGCTTCCTTTGACTCCACTGTTCGGCTTTGGGATGTAGATCGAGGCATCTGCATCCACACACTAACCAAACACCAGGAGCCCGTGTACAGTGTGGCCTTCAGCCCTGACGGACGCCATCTAGCCAGCGGCTCTTTCGACAAGTGTGTCCACATCTGGAACACACAGACTGGTGCTTTAGTCCATAGCTACAGAGGGACAGGGGGCATTTTTGAAGTTTGCTGGAATGCAGCAGGAGACAAAGTAGGAGCAAGTGCGTCGGACGGCTCTGTTTGTGTATTAGATCTGCGGAAATAGCGCTGCTTGCTGGAAGCCATGGACCGACTATGAATGTGTACATAGCCAAAATGACTGTCCCTGACCCTCAAACTGCTACAGTCCCTAGTGAACCATGGCCAGCCActacagacaaacaaacacaagcacccTGACGCCACCGGCCGAGCGGAGAGGATGTGATTCCAACCAGAGACATTCAAATGACTTTTGTGAGGTGGAGAGCGAGCGATCGAGAGagaggaaaacaaacaaacaatataacagGAATAAAGACAAGAGGACTGGTATATGTACCAAATTTGGAAGATATTTTACTATTTGTTCTTCAAAACCAATCTCATCAAAATAAACGAACGAAAGGATTTTA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016575 histone deacetylation biological_process
GO:0000118 histone deacetylase complex cellular_component
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-314 Predicted to enable transcription corepressor activity. Predicted to be involved in histone deacetylation and regulation of transcription by RNA polymerase II. Predicted to be part of histone deacetylase complex. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 41. Orthologous to human TBL1XR1 (TBL1X receptor 1).

Ensembl:

ensembl_id ENSDART00000141612

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006368 lncRNA upstream 594425 7880177 ~ 7971030 (+) False XLOC_003229
TCONS_00008547 lncRNA upstream 610909 7880142 ~ 7954546 (+) False XLOC_003229
TCONS_00008548 lncRNA upstream 610909 7907007 ~ 7954546 (+) True XLOC_003229
TCONS_00008388 lncRNA upstream 739383 7825353 ~ 7826072 (+) True XLOC_003228
TCONS_00006367 lncRNA upstream 782141 7782514 ~ 7783314 (+) True XLOC_003227
TCONS_00006381 lncRNA downstream 829628 9511533 ~ 9520179 (+) False XLOC_003236
TCONS_00006383 lncRNA downstream 829628 9511533 ~ 9522073 (+) False XLOC_003236
TCONS_00006382 lncRNA downstream 829628 9511533 ~ 9522073 (+) False XLOC_003236
TCONS_00008389 lncRNA downstream 836901 9518806 ~ 9522073 (+) False XLOC_003236
TCONS_00008550 lncRNA downstream 838839 9520744 ~ 9521759 (+) True XLOC_003236
TCONS_00006374 mRNA upstream 386310 8170948 ~ 8179145 (+) False XLOC_003232
TCONS_00006375 mRNA upstream 386506 8171068 ~ 8178949 (+) True XLOC_003232
TCONS_00006373 mRNA upstream 404306 8152968 ~ 8161149 (+) True XLOC_003231
TCONS_00006371 mRNA upstream 407960 8152872 ~ 8157495 (+) False XLOC_003231
TCONS_00006372 mRNA upstream 408420 8152882 ~ 8157035 (+) False XLOC_003231
TCONS_00006386 mRNA downstream 1859353 10541258 ~ 10550377 (+) False XLOC_003240
TCONS_00006387 mRNA downstream 1866266 10548171 ~ 10550375 (+) True XLOC_003240
TCONS_00006388 mRNA downstream 2227278 10909183 ~ 10960394 (+) True XLOC_003242
TCONS_00006389 mRNA downstream 2293107 10975012 ~ 11020857 (+) False XLOC_003243
TCONS_00006390 mRNA downstream 2293576 10975481 ~ 10988549 (+) False XLOC_003243
TCONS_00006353 other upstream 1291077 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 1414549 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 1414815 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 1415089 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 1415373 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006384 other downstream 1216608 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 2585985 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 2590029 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 2663898 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 2690981 11372886 ~ 11373182 (+) True XLOC_003255

Expression Profile

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