RNA id: TCONS_00008549


Basic Information

Item Value
RNA id TCONS_00008549
length 549
lncRNA type read_through
GC content 0.36
exon number 2
gene id XLOC_003235
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 8675969 ~ 8677720 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agatgtgtttggaagcaattcgtaacattttaataatattttggcaaattgaaccaaatgaacgaaatgactcgaaaaaagattcattcatcttgatgaacgagactcaaagatccgagtcagtaaaatgatccaaacttcccatcaccAAAACACACGCTTGCAACTCTCAATATATGCATACAATCCATGCGCCTACATTGAAATTAATGGACTTGTGCGTACAAAAGGCGAGATATGTGAATGGCCTATTTCACAGCAGCATCACAACGAGGTCTATGATCTATGCTTAAGAACAAGTCTGTAAACACACACGCAACTACTTCTGATATTTGGTCAAGCAGAACATCAGAgcgttagttGAGATTGACAGTGCGCTTgcatgctcacacatacacacacatttgttttgtcATGGGTCTGTTCTATAGACAATTTATTATAGCTTTACTAGCtgatttttattcaatttagatTAAATCTGTTGTAGAGACATGTCAGAGACAGGTCTTTGATAAAGatctaattgtttttcttttgaaaaatgaT

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006379 lncRNA upstream 95412 8578054 ~ 8580557 (+) True XLOC_003234
TCONS_00006368 lncRNA upstream 704939 7880177 ~ 7971030 (+) False XLOC_003229
TCONS_00008547 lncRNA upstream 721423 7880142 ~ 7954546 (+) False XLOC_003229
TCONS_00008548 lncRNA upstream 721423 7907007 ~ 7954546 (+) True XLOC_003229
TCONS_00008388 lncRNA upstream 849897 7825353 ~ 7826072 (+) True XLOC_003228
TCONS_00006381 lncRNA downstream 833813 9511533 ~ 9520179 (+) False XLOC_003236
TCONS_00006383 lncRNA downstream 833813 9511533 ~ 9522073 (+) False XLOC_003236
TCONS_00006382 lncRNA downstream 833813 9511533 ~ 9522073 (+) False XLOC_003236
TCONS_00008389 lncRNA downstream 841086 9518806 ~ 9522073 (+) False XLOC_003236
TCONS_00008550 lncRNA downstream 843024 9520744 ~ 9521759 (+) True XLOC_003236
TCONS_00006378 mRNA upstream 1480 8565828 ~ 8674489 (+) False XLOC_003233
TCONS_00006374 mRNA upstream 496824 8170948 ~ 8179145 (+) False XLOC_003232
TCONS_00006375 mRNA upstream 497020 8171068 ~ 8178949 (+) True XLOC_003232
TCONS_00006373 mRNA upstream 514820 8152968 ~ 8161149 (+) True XLOC_003231
TCONS_00006371 mRNA upstream 518474 8152872 ~ 8157495 (+) False XLOC_003231
TCONS_00006386 mRNA downstream 1863538 10541258 ~ 10550377 (+) False XLOC_003240
TCONS_00006387 mRNA downstream 1870451 10548171 ~ 10550375 (+) True XLOC_003240
TCONS_00006388 mRNA downstream 2231463 10909183 ~ 10960394 (+) True XLOC_003242
TCONS_00006389 mRNA downstream 2297292 10975012 ~ 11020857 (+) False XLOC_003243
TCONS_00006390 mRNA downstream 2297761 10975481 ~ 10988549 (+) False XLOC_003243
TCONS_00006353 other upstream 1401591 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 1525063 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 1525329 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 1525603 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 1525887 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006384 other downstream 1220793 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 2590170 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 2594214 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 2668083 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 2695166 11372886 ~ 11373182 (+) True XLOC_003255

Expression Profile

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