RNA id: TCONS_00008389


Basic Information

Item Value
RNA id TCONS_00008389
length 1034
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_003236
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 9511533 ~ 9522073 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGAAGTGTTCCTCTGCATTTGTTTACAGCCATTCCCACACTGAGGCTCGAGACAATGACGTCACGGCCCACAGGAAGAGAAGAGCAAGTTAAGAAACTGGATTTTCTTTCAGGCGGCATGTGGTGTTTAAGTCAGAGGTCAGATCTCTCCTGCTGCCCGTCCAGTGAGGTCACAGCATCAGACTGCTACGCCTGACTGTCTTCTGGAGCCACCATCCATAATCTAAAGAACCCAGGGAAGAGGCCAAAAACCTGTCAGTACGACACCGGCTTCAAACTGCGAAGCTGAGGATGCCATAGGGAACAAACTAAGGCAACCGAGCAAATATGATATTTATacaaattttcagattaaaagcaagattttttttgtttgtttgttttatcttcTACATCTTTGAATTGTATCTACCAATTCTTTGTGTAAAACATAGCATTCATTTAACGTGTAAAGGCTAAATATCATAATTTATTATGCacattttaattatgaaaaatatcCAATTCATATTTAAATGGCATGCACTCAAAGCAAAACTTTTTAGTTCATATTTTTACTTAATTACAGCATTGTGTTCTTTTTCATGTTACTGATTATCTACAGTAtggtaaaatacaaattaatttcaAACTTACGTGAAACGTGTCATCCTCTGAATGTAGCAACATCCAATCACGGTGGTCTTCTGAGGTATGGGTCTTAACTCCAACATATTCCtgacaataaaaattaaacagacaTCAAATCTGAATTCACAAGCTTCCGGATGTCATCTTTTTTGCGTTTGAACGCAGAAGGCAGCAACTCATTAGCAGAGCAAGTCCCTTCtaatgtattctatagtctttggtactAAGccagaaaacttttgttttcaaaagatgTCAGCTGAACTCAAAGTGGATTTAAAATGAGCCTAATGTTTCTGAGAAGCAAGTATTTGTGAAAAcctattttttccagacacatttgcCAGTCATGTTGATAGATATCTATCAATGACAGCACTTAAAAAGAAAGTATTTCCTGTCGG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048732 gland development biological_process
GO:0048468 cell development biological_process
GO:0021546 rhombomere development biological_process
GO:0072359 circulatory system development biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0035295 tube development biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0035904 aorta development biological_process
GO:0033278 cell proliferation in midbrain biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0033564 anterior/posterior axon guidance biological_process
GO:0048666 neuron development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0061351 neural precursor cell proliferation biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008549 lncRNA upstream 841086 8675969 ~ 8677720 (+) True XLOC_003235
TCONS_00006379 lncRNA upstream 938249 8578054 ~ 8580557 (+) True XLOC_003234
TCONS_00006368 lncRNA upstream 1547776 7880177 ~ 7971030 (+) False XLOC_003229
TCONS_00008547 lncRNA upstream 1564260 7880142 ~ 7954546 (+) False XLOC_003229
TCONS_00008551 lncRNA downstream 79672 9601745 ~ 9603070 (+) True XLOC_003237
TCONS_00006385 lncRNA downstream 1013383 10535456 ~ 10537403 (+) True XLOC_003239
TCONS_00008552 lncRNA downstream 1147062 10669135 ~ 10673008 (+) False XLOC_003241
TCONS_00008553 lncRNA downstream 1147379 10669452 ~ 10673008 (+) True XLOC_003241
TCONS_00008390 lncRNA downstream 1543427 11065500 ~ 11065792 (+) True XLOC_003244
TCONS_00006380 mRNA upstream 836359 8660158 ~ 8682447 (+) True XLOC_003233
TCONS_00006377 mRNA upstream 836901 8565455 ~ 8681905 (+) False XLOC_003233
TCONS_00006376 mRNA upstream 839901 8565323 ~ 8678905 (+) False XLOC_003233
TCONS_00006378 mRNA upstream 844317 8565828 ~ 8674489 (+) False XLOC_003233
TCONS_00006375 mRNA upstream 1339857 8171068 ~ 8178949 (+) True XLOC_003232
TCONS_00006386 mRNA downstream 1019185 10541258 ~ 10550377 (+) False XLOC_003240
TCONS_00006387 mRNA downstream 1026098 10548171 ~ 10550375 (+) True XLOC_003240
TCONS_00006388 mRNA downstream 1387110 10909183 ~ 10960394 (+) True XLOC_003242
TCONS_00006389 mRNA downstream 1452939 10975012 ~ 11020857 (+) False XLOC_003243
TCONS_00006390 mRNA downstream 1453408 10975481 ~ 10988549 (+) False XLOC_003243
TCONS_00006353 other upstream 2244428 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 2367900 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 2368166 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 2368440 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 2368724 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006384 other downstream 376440 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 1745817 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 1749861 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 1823730 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 1850813 11372886 ~ 11373182 (+) True XLOC_003255

Expression Profile

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