RNA id: TCONS_00006386


Basic Information

Item Value
RNA id TCONS_00006386
length 2395
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_003240
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 10541258 ~ 10550377 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTGCTTTCAGTCCTTCCACAACAACTGAAATCCAGGGctttgacaacaacaacaacaaaaaaaaaacacttctacaTTTGAATTACATCATGGATGGGCTACGGTCTCAATGAGCCCAAATGCAGTGTTGACACAACCCAGCAGAGCGTCTTCACTTCAAAAGCAAGTTAAGCCAgacatttgttatttttcttttgcaaaaagagagaaaaaaaatggacACAAAGAGGAAAATGCTTTGGGTAAATGCGTACGGCAGGCCCACACATGTACACTGAGATGACTACGATGGAATTCAGGCAAACAGTTTCCTGGAAAATCATCGTGAGCGGCACATCTGGAGCGCATTATTGGACTTGACAAGAGAGAAGGGTGTTTGAGAGTGCGTGTGGCTTAACAGAATGTTCATGAATTGCAGAAGGGTGAAAAAATGGCAtttcctccagcttctctcgaTGTGCTGTGTCATGTCAGTCCTTATGGTTTGCTGGGAGCACGTGGACCATCACGTAGTGAGCCATGTGAAATCCTACTCCTACCGCTACCTAATCAACAGCTACGACTTCATCAACAAGAGCCTCAGCGTCAGCCCGGAGGAAGCCGCCCGGTTTGGTAGCTTCCCGTATTTGCTTGACCGCAGGGACGTTTGTAAAAACAAAGACGTCCTGCTTTTGCTCTTTGTCAAGTCTTCTCCAGGAAACTTCAAAAGGCGGCAGGCCATACGTTCCACTTGGGGCAACGAGTCCTATATTAGTCAGGAACTCGGTGTTGTCGTCAAGGTAGTGTTTGCTATGGGAGTTCGCCCTGACCGATCGGGACATAAAACAATGCAGAGGGAACTGCGCAAGGAGCACATGGCCCACCATGACCTGATTCAACAGGACTTCCTCGACACATTCCACAACCTCACTGTGAAACTGCTGCTTCAGTTCCGCTGGACGCACGAAAACTGCGCACATGCCCACTTCCTTATGAGTGCAGACGATGATGTCTTCATCCATGTGCCTAACCTAGTGCACTACCTCCAGGAGCTTAAAAGTCAGAACGTACGCAACCTCTGGGTCGGCCACGTTCATAGGGGGGCACCGCCTGTTCGGAAGCGGGACAGCAAGTATTATATGCCATTTGATATGTATCAGTGGTCCTCCTACCCAGATTACACTGCTGGCGCCGGGTATGTCGTTTCTGGCGACGTGGCAGCCAAAATCTACCAGGCCACGCAGTCTCTAAACGCCTCAATGTATATCGATGACGTCTTCATGGGCATCTGTGCCATCGCTGCGGGCGTCTCGCCTCAGGAACATGTTTACTTCTCGGGTGAGGGGAAAACGCCCTATCACCCGTGCATCTACGAAAAGATGATCACCTCTCACGGACACGAAGGCGATATCAGGTACCTGTGGAAGGCTGCGACCGGCCCGCAGGTAGAAGGCATTTCATCTGGATTGTTGGGGAAGTTGTATTGCGCAGCTGTGAAAATGACGCTGCTTTGTAAGCCGTACTTTACGAACACGTATTCATGCATGGCAGCTTTTACATGATGCACTGTGAGATCTATGAAGTCCGAGCAGTATTTgcgttttatttttctttcctcgTTTACTTTTGCTTTAAATGTTAAATAGTCATTTCTTAATATTGATGGAAGCAATGCGACATAAGCATTTGTTTAGCACTGttgcatttctatttatttatttgaatgtacAGCAAATGAATCCTACAGCAAAAGAGCTGCAATGGGATGGAAATATGGTGCGTTCCGAATGTATGTCTTCAACAATACATGGATCTCACAAAACTCCTCAAGTTCACACTTCTGATTCGAACAGTTAAATTAACAGCTAATATTTGACATGTTTCCGTGAAATCTATCTGTGCTCAGCTTTAGCAAACTGTGAGTTTCAGTTCTTGCATATTGTGGAGGCGTAAATTAGATGCTCCAAATTTGAAGTGAGGTGTGGATGCTGTTGAAGAATGTGCTGGAAAAATCtgcaacattttaaatgtcaaaccTCTGCTTGAGCTTTTCAAACAAGTGGGCATTTTAAGGAACTGATACAAACTGGTGCTATAGACCTGTAAAGTAGAATTTGACAATTTATATCTGGAACAGTGAAACTAAACCTATTGAGACATATTTGATTGTGACATTGTGATCCTCATGAcatctgaagatttttttaatgtcaacCCAATGCAAAACAATCTCATTCACTGCACTgtaatatgaaatatttaatataaaaagaaTTGAAGTATATGAGAATTAtcaatgcaaataataaaaatcgCAGCAGGTTGTTGCTGCAAGAGGAGTGAGTTATGTTGATTCAGTATGTTTTGTTCTTTACAAACAAtattgccaaaataaaataaaaaagtacactgcaa

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0007420 brain development biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0008457 beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0047256 lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8470 Predicted to enable beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity. Predicted to be involved in brain development. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Is expressed in solid lens vesicle. Orthologous to human B3GNT5 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5).

Ensembl:

ensembl_id ENSDART00000132365

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006385 lncRNA upstream 3855 10535456 ~ 10537403 (+) True XLOC_003239
TCONS_00008551 lncRNA upstream 938188 9601745 ~ 9603070 (+) True XLOC_003237
TCONS_00006383 lncRNA upstream 1019185 9511533 ~ 9522073 (+) False XLOC_003236
TCONS_00006382 lncRNA upstream 1019185 9511533 ~ 9522073 (+) False XLOC_003236
TCONS_00008389 lncRNA upstream 1019185 9518806 ~ 9522073 (+) False XLOC_003236
TCONS_00008552 lncRNA downstream 118758 10669135 ~ 10673008 (+) False XLOC_003241
TCONS_00008553 lncRNA downstream 119075 10669452 ~ 10673008 (+) True XLOC_003241
TCONS_00008390 lncRNA downstream 515123 11065500 ~ 11065792 (+) True XLOC_003244
TCONS_00006406 lncRNA downstream 689071 11239448 ~ 11240944 (+) True XLOC_003247
TCONS_00006410 lncRNA downstream 717529 11267906 ~ 11272314 (+) False XLOC_003248
TCONS_00006380 mRNA upstream 1858811 8660158 ~ 8682447 (+) True XLOC_003233
TCONS_00006377 mRNA upstream 1859353 8565455 ~ 8681905 (+) False XLOC_003233
TCONS_00006376 mRNA upstream 1862353 8565323 ~ 8678905 (+) False XLOC_003233
TCONS_00006378 mRNA upstream 1866769 8565828 ~ 8674489 (+) False XLOC_003233
TCONS_00006374 mRNA upstream 2362113 8170948 ~ 8179145 (+) False XLOC_003232
TCONS_00006388 mRNA downstream 358806 10909183 ~ 10960394 (+) True XLOC_003242
TCONS_00006389 mRNA downstream 424635 10975012 ~ 11020857 (+) False XLOC_003243
TCONS_00006390 mRNA downstream 425104 10975481 ~ 10988549 (+) False XLOC_003243
TCONS_00006391 mRNA downstream 433916 10984293 ~ 11019329 (+) True XLOC_003243
TCONS_00006392 mRNA downstream 471019 11021396 ~ 11075105 (+) False XLOC_003244
TCONS_00006384 other upstream 642628 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006353 other upstream 3266880 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 3390352 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 3390618 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 3390892 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006409 other downstream 717513 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 721557 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 795426 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 822509 11372886 ~ 11373182 (+) True XLOC_003255
TCONS_00006426 other downstream 835985 11386362 ~ 11386658 (+) True XLOC_003257

Expression Profile

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