RNA id: TCONS_00063950


Basic Information

Item Value
RNA id TCONS_00063950
length 4945
RNA type mRNA
GC content 0.48
exon number 24
gene id XLOC_032917
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 30124197 ~ 30210378 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACGACTAAGAGGAAGATCATCGGCCGCCTGGTGCCCTGTCGATGTTTCCGGGGGGAGGAGGAGGTCATCTCAGTTCTGGATTATTCCCACTGTAGCCTGCAGCAGGTCCCCAAGGAGATCTTCAGCTTCGAGCGCACGCTGGAGGAGCTTTACCTGGACGCCAACCAGATTGAGGAGCTGCCTAAGcaaCTCTTCAACTGTCAAGCGCTCAAGAAGCTGAGCATGCCTGACAATGACCTCTCCAACCTGCCAACCACCATTGCCAGCCTTGTGAATCTGAAAGAGTTAGATATTAGTAAAAATGGTATTCAAGAGTTTCCAGACAACATCAAATGCTGTAAATGTCTATCAGTTGTGGAGGCCAGTGTAAATCCTATAGCCAAGCTCCCGGAAGGCTTCACCCAGCTTCTAAACCTGACACAGCTCTTCTTAAATGATGCCTTCCTTGAATACCTGCCTGCCAATTTTGGGAGATTGTCAAAATTACGGATCTTGGAACTTCGTGAGAATCACCTGAAAACTATGCCAAAGTCAATTCATAGGCTGTCGCAACTGGAGCGGTTAGACTTGGGAAGCAATGAATTCTCTGAACTGCCAGAAGTGCTGGAGCAGATCCATAGTCTAAAAGAGCTGTGGCTGGACAACAATTCATTACAAACTATACCAGGGtcTATTGGGAAACTGAGGCAGCTGCGGTATCTAGACTTGGCGAAGAACAGGATTGAGAGTCTAGATGCAGATATCTCTGGCTGCGAGTCCTTAGAGGACCTTCTCCTCTCCGCCAACATGCTGCAACAGTTACCTGATTCAATAGGAAAGTTGAAAAAGTTGACAACATTAAAAGTTGATGACAACCAGCTCACCTCACTGCCTAACACCATTGGAAGTTTATCACTTTTAGAGGAGTTTGACTGTAGCTGCAATGAACTGGAATCTCTGCCTCCCACCATTGGCTACTTGCACAGTCTTCGGACATTTGCAGCCGATGAGAACTTCTTGTCTGATCTGCCCAGAGAGATTGGAAACTGCAGGAATGTCACGGTCATGTCCTTGCGCTCCAATAAACTGGAGTTTCTGCCTGATGAAATTGGACAGATGACAAAGCTACGTGTTCTCAATCTAAGTGACAATAGGTTAAAGAATCTTCCCTTCACTTTCACTAAATTGAAAGATCTTGCTGCACTCTGGTTATCTGACAATCAGTCCAAGGCCCTTATCCCCCTTCAAACAGAGGCTCATCCTGAGACCAAACAGAGAGTCTTGACCAACTACATGTTCCCTCAGCAGCCCAGGCATGATGAGGATTACCAGTCTGACACTGACAGCTTTAATCCCACTCTCTGGGAGGAGCAGAGACAACAAAGGATGACGGTGGCGTTTGAGTTCGAGGACAAGAAGGAGGAAGAGGACAACTCAGGAAAAGTGAAGGTTGAGATTAATTTAAAGCGTTATCCCACCCCGTACCCAGAAGACCTCAAGAACATGGTAAAGTCAGTGCAGAACCTGGTGGGTAAAACCACTCACCCCCTAAACACTGAGAAATGCTCTTCTGGGACCAATATGGAGCTCCACAGCCAAGACAAGTATGAGCCCAAGTGGCCCATTGCTCCAAAGGAGGACTCCATGGGAGGCTCCCCAAATGATATCCGAATCTCTGACATGAGACCAACTTTGGTAGAGCCACCAATGTACAAACCAAAAGTTGTGTTACTGGGCAAGGAAAAGAAAGagTCAACAGATGAGTCTGAACCAGACAAAATGCATTGTTTGAACAACAGCGGATCATCTGCCACTTATTCAGACTACTCACCCTCCCAGGGATCATCTGGCTCCTCCAACCCACCTGGAAATGTCGGCAATCTGCAAACATCTGGGAAAGAGGGGTCATCACAGACTCACTGGACCAACAGGCTGGCTCAGTCTTTCCCAAAGCCCATTGAAACCAAGCCTCTTCTAAGCCAGAGGGAAACACCTCCTTCCAGCACGCTGCAGCAGCGAGGTGAGAGGCGGCCACTCAGCGACACCTTCGACAGCTGGAACGATGCCCCCCACTATGATAACACAGGTTTTGTTGCCGAGGAGATGCCTCTTGACACTCCGAGCAGCAGTGCTGGAAACCCCATGCTAGGCTCAAAGCCCCGGAGTGCATCGACAGCACATGGGCGACGGCCTCTCATGAGACAAGACCGCATCGTTGGAGTTCCCCTAGAGCTCGATCAGACACAACAAACTTTCCACACAGTTCGCAACACCCCTGACACTGAAGTGCCTGCTCCTTCAAACCCCTGGCAAAACTGGACAAGGACTCCCAGTCCTTTTGAGGACAGGACAGCTTTCCCTTCCAAGTTGGAAATTACCCCAGCCAACAGCCCTAATCCTGACCGTAAGGACTTTGAGCAGGAGATGGGAGAAATACCCGGCACTTTCCCCTCAACTGGAGCCTGGGGGTTTCTGGACTCTACAGACTCAGGGACGGGACGAGGTCATCCCAACGTTTATACGCACATCCAGGTTGGGAAAGAACCAAATAAGGGAAACACTATGGTTCTTAGCAAAAGTTCTGAAAGACTTTCACCAATGATGAAGGAGGTAAAAGCAAAATTTAAGAAATCCCAGAGCATAGATGAAATCGATACCGGGTCATACAAGGTCTATAGCATCCCTATGGACAGCTACAGTTCTAGCATAGAAAATCAGGGAAGTGTTGATCGAGCAGACTTTCCTATACCTCTAGAACAGAGCATGTCCAGGAGCCAGTCAGCTCCAATGCTGGATGATGATCTGGATGGCTACGGTTTGAATAAAAGCTCTCAGCAGCAGAAGCCCGCCATCCCAAAGAAAGTTTACCATTTTGACCAAAGCTTCAACCCACAAGGAGCCATGGATGTTTTGAAAGCAGAGAGGAGGGTTCCTCCACCATTCCCCAACACCCCTGAATATGTGAACCAGCCTGGGAAGACTTTGCCAAAGGAACTAGTCAGTCCAAGGGGCTATCGAGGTTATCCGCAGATGGAACAAGTCTTTTCATTTGCTCCGAATGCCACTGATGATTCTCACAATCAACAACTCTCTGTCCAGCCCCAACGCTCCAGGCCGGGTTTCCTGAGGCGAGCGGACTCTTTAGTAAGTTCGACGGAGATGGCGCTGTTCCGCAGAGTGGCTGAGAACCATGAACTCCAGCTGGCAGAGCACTACAGCAGACCTCAACAAATAAAGAGCATGCTGGAGCAACAGAACAGCTTGTCTACCATGGCTGACACTCAGTTCCACAAGAGGAATGGTAGGTATGATGAAGATTACTCATCTTATCAAGAACCCAAAAAGCCCATCATGGGTTATCCCACCAAGAGTCTGACACAACGTCGCCCCCTGTCTGCACGGAGCTACAGCACAGAGACATACGGGGCATCTCAGGCAAGGCCAGTGTCTGCCCGGCCCACAATGGCTGCTCTTCTAGAGAAATTGCCTTCAGATTACAATCTTAGTACATGCACTGAGAAAAGCCCTGAAGCCGACATGAACCTGAGACCTGTCCCTCAGAAACAAGAGGACCTGACCTCCAAAATGCCAGTAGACTGGAGACAGCAGCTGCTTAGACACATAGAAGCGAAGAGACTAGACCGGAGCGCTGTCCTTAAGCACAACACAGTAAACTTCGGCATGCTGTACTCTGGAGGCTATGCTGCACCGCATGCCAGCAGAAGCATGACAATAAACTTTTACAATAACACAAAGCATGAAAACCAAACAACTCAGTGGCTACCTCTACCAAATACACCTTCACAACAGAGCAATATTTTAGATAATGGACAAGAGGTCATGTCCCCGAGTAGCCAGTGGGCGCCGTATTCACTGGGACGAAGAGATGTGCCACCAGAGAACATGAATATCATCAAAAAGCCTGGAGTTCACAATCCCCATCAACAACAGACGATGATGATCACTTCAGCCCCCCCACCCCACCGGACGGCCCGCGACCAGCAGTATGAGGGTGCCATCAACAAGGTGTCCATCCAGCAGTACCAGTCCCCGCTGCCCATgcccatcaccaccaccagcccCCGGCCCCAGAGTGCCCGCTGCTTCATTCAGACTAAAGGCCAGAAGAGCATGGATGGCTTTCCAGAACAGCTCTGTGTGAGAATCGAGAAGAACCCTGGCCTTGGTTTCAGCATCTCAGGGGGAATCAGTGGACAAGGGAACCCCTTCAAGCCCTCGGACATGGGTATCTTTGTTACTAGGGTACAGCCTGATGGACCAGCCTCCAACGTTCTTCGACCAGGGGACAAAATTCTGAAGGCCAACGGACATAGTTTCTTACACATGGAGCATGAAACCGCAGTGTCTCTTCTGAAGAATTTCCCGAAAACTGTGGACTTGGTAATCTTAAGGGAGagcacaatataaatatttttatagctTATAAAGACTTCTCACCCCGACGGAACACAGGAACTTGTACATCATCTTTTTATCTAGGAAGAATTTTGCCAATTGCTGGACCAATGGCAAATTCCAGTGCCAAATGTACACTAGAGGACATATCTAATAACGTTATATACGGCTTACACATTCTGCACCGACATACATTGGTTGAAATCTTTGGTTGATGTTGTTGATATTCTTTATCTCAGCCTGTGGCTGTGAGTgggtgcatttttttttcttctttttcctgcTTATTTATATGGCGTATTATTTTGTACCTATTTTTCCTAGCAGCTTTTCGGTTTGAGCATGAAAGCACATCTGCTTTTAAGGACATTTACCCACCATAACACTGCCTCAACTTTGTAAATGCCTtgtgtaaatatatacatttacaacTCAAATGTGATTAGAGCATAGAATGTGAATGAAAGACACACTGATGACTTTTCTAACACATCCACCAgtttttataacaaatttaaCAAGGGTTACGATTTAGGGAaaacgacaa

Function

GO:

id name namespace
GO:0032088 negative regulation of NF-kappaB transcription factor activity biological_process
GO:0046579 positive regulation of Ras protein signal transduction biological_process
GO:0071356 cellular response to tumor necrosis factor biological_process
GO:0007165 signal transduction biological_process
GO:0016323 basolateral plasma membrane cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-130530-876 Predicted to enable signaling receptor binding activity. Predicted to be involved in several processes, including cellular response to tumor necrosis factor; negative regulation of NF-kappaB transcription factor activity; and positive regulation of Ras protein signal transduction. Predicted to be active in basolateral plasma membrane. Orthologous to human LRRC7 (leucine rich repeat containing 7).

Ensembl:

ensembl_id ENSDART00000157359

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064747 lncRNA downstream 38595 30083946 ~ 30085602 (-) True XLOC_032916
TCONS_00065177 lncRNA downstream 263345 29851193 ~ 29860852 (-) True XLOC_032915
TCONS_00065176 lncRNA downstream 275350 29846493 ~ 29848847 (-) True XLOC_032914
TCONS_00065175 lncRNA downstream 275431 29846493 ~ 29848766 (-) False XLOC_032914
TCONS_00065174 lncRNA downstream 275489 29846493 ~ 29848708 (-) False XLOC_032914
TCONS_00063953 lncRNA upstream 11456 30221834 ~ 30221970 (-) True XLOC_032919
TCONS_00065178 lncRNA upstream 241909 30452287 ~ 30456089 (-) False XLOC_032920
TCONS_00065179 lncRNA upstream 241909 30452287 ~ 30459015 (-) True XLOC_032920
TCONS_00063964 lncRNA upstream 645504 30855882 ~ 30868761 (-) True XLOC_032926
TCONS_00063965 lncRNA upstream 859152 31069530 ~ 31147255 (-) True XLOC_032927
TCONS_00063943 mRNA downstream 511928 29476933 ~ 29612269 (-) False XLOC_032909
TCONS_00063947 mRNA downstream 586112 29477812 ~ 29538085 (-) False XLOC_032909
TCONS_00063946 mRNA downstream 586112 29477812 ~ 29538085 (-) False XLOC_032909
TCONS_00063945 mRNA downstream 586978 29477812 ~ 29537219 (-) False XLOC_032909
TCONS_00063944 mRNA downstream 608488 29477812 ~ 29515709 (-) False XLOC_032909
TCONS_00063954 mRNA upstream 273627 30484005 ~ 30485009 (-) True XLOC_032921
TCONS_00063955 mRNA upstream 415567 30625945 ~ 30658848 (-) False XLOC_032922
TCONS_00063956 mRNA upstream 419615 30629993 ~ 30658755 (-) True XLOC_032922
TCONS_00063957 mRNA upstream 466617 30676995 ~ 30683637 (-) True XLOC_032923
TCONS_00063958 mRNA upstream 474318 30684696 ~ 30689126 (-) True XLOC_032924
TCONS_00063938 other downstream 849789 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 1039546 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063923 other downstream 1039643 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063930 other downstream 1071325 29044997 ~ 29052872 (-) False XLOC_032900
TCONS_00063903 other downstream 3068334 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063998 other upstream 2099310 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064000 other upstream 2184124 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00064015 other upstream 3232956 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 3467999 33678377 ~ 33681084 (-) True XLOC_032954
TCONS_00064020 other upstream 3515669 33726047 ~ 33726148 (-) True XLOC_032955

Expression Profile

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