RNA id: TCONS_00063958


Basic Information

Item Value
RNA id TCONS_00063958
length 1711
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_032924
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 30684696 ~ 30689126 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAGAAAAAGGTCATCGTTCTGTCACATGCGACGTTTTAGTTGTGTTTTATTGATGTACAAAATCATAAGCGCCCAAACAATGATCTTGGTTTGATCTGACGGTATTTGTGTAAAATATACGCTGGAAACAAAACATAACTTACGAATAATTGTCAAAAATGGAGTCAGTTATGCATCACTGCCATCGCAAGCTCCCAACCCTCCTGTCCAGAactctctttaaaacattaaagagAAGACACCTCAACCTCACCATCCACACTGTTTCTGCCTCTTCCAAACCAGTCATCCCAACACCGCTCGTGTCTCGCCTCTTCCAGCCATCAAACCTCCGGGAAGGTCAGGATGGAGGAGACCTGACATGTCGGAGTCAGAGACTGATGATGCAGACTGGACTGATCCATCCGTCAAACCCCGGCTGCTTCTATTACTTGCCTGTGGCTCTGAGGTCCTTGGAGAAGCTGGTCCGGCTCATTGATGAGGAGATGCATGCGATCGGTGGGCAAAAAGTGGACATGCCAGCGCTCTGCAGTGCAGAACTGTGGAAGAAAAGTGGTCGCTGGGAGCTCATGGGAAAAGAGATGTTCAGACTGCTGGATCGGCACAATGGGGAATACTGTCTCGGACCGACTCACGAAGAAGCAGTCACTGAGCTTTTTGCCTCCCAGACCACCATGTCTTACAAGAAGCTGCCACTTCTGCTTTACCAGGTAACACGCAAATTCCGTGATGAGCAGAAGCCAAAATTTGGACTCTTACGTGGTCGGGAATTTTACATGAAAGACATGTATTCATTTGACATTAATGAGGAGGCAGCTCTCCACACATACAACTCTGTGTGCCAAGCGTATGGACGCATATTCGACCGACTGCACTTAAAGTGGGTGCAGGTCCAGGCTGACACTGGAAACATAGGAGGCACACTTTCCCATGAGTTTCAGCTGCCAGCAGACATTGGCGAAGACAAGTTACTTGTTTGTGGAAACTGCGGCTTCTCTGCCAACATTGAGACCCTGGAACCAGGACAGGCCGAGTGCTCGCAGTGTCAAACAGGCAAACTGACTGAATCCAGAGGCATTGAAGTGGGCCACACTTTTTACCTCGGCACTAAATATTCACAGGCGTTTAAAGCACTTTTTGTTAATGCATCCAATGTGCCTGCGGTGGCAGAGATGGGATGTTTTGGACTTGGTGTCACTCGAATACTAGCAGCTTCTATAGAGGTGATGTCCACAGAGGATGCCATTCGCTGGCCTGGATTGATAGCTCCCTATCAAGTGTGTGTCCTGCCACCTAAAAAGGGAAGTAAAGCACATGAAGCCACACTGAAGGCTGAGGAACTGGCTCAAAGCTTGGGAAATAGTCTTCCAAATTTGAAAGGTGAGGTGGTACTGGATGACAGGACTCAAATGACCATTGGGAAACGACTGAAGGATGCTAAAATTCTGGGGTATCCATTTGTGGTGGTGGTGGGCCAGACGGCTCTAGATGATCTGGCCAGCTTTGAGGTGGTTTGTCAGCAAAGTGGAGAGACTCTCTTTTTGAGTAAAGATGGGCTTGTTGATCTTTTAAGTACGGTTGAAACTATCTAATATATGTGTACATTTATCAGGCTAGGTGATGGTGAAGAGAAAAAGAGTGTGATGTATAAATATTATAAGTGTTATAACAAGAAAATGTTGATTATTAAAGTGGTCTGTTTGTAACAA

Function

GO:

id name namespace
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0006433 prolyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004827 proline-tRNA ligase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4219 Predicted to enable proline-tRNA ligase activity. Predicted to be involved in prolyl-tRNA aminoacylation. Predicted to act upstream of or within tRNA aminoacylation for protein translation. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 75. Orthologous to human PARS2 (prolyl-tRNA synthetase 2, mitochondrial).

Ensembl:

ensembl_id ENSDART00000065211

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065179 lncRNA downstream 225681 30452287 ~ 30459015 (-) True XLOC_032920
TCONS_00065178 lncRNA downstream 228607 30452287 ~ 30456089 (-) False XLOC_032920
TCONS_00063953 lncRNA downstream 462726 30221834 ~ 30221970 (-) True XLOC_032919
TCONS_00064747 lncRNA downstream 599094 30083946 ~ 30085602 (-) True XLOC_032916
TCONS_00065177 lncRNA downstream 823844 29851193 ~ 29860852 (-) True XLOC_032915
TCONS_00063964 lncRNA upstream 166756 30855882 ~ 30868761 (-) True XLOC_032926
TCONS_00063965 lncRNA upstream 380404 31069530 ~ 31147255 (-) True XLOC_032927
TCONS_00063976 lncRNA upstream 614194 31303320 ~ 31305958 (-) True XLOC_032929
TCONS_00065180 lncRNA upstream 1056165 31745291 ~ 31749784 (-) True XLOC_032933
TCONS_00063990 lncRNA upstream 1340787 32029913 ~ 32034640 (-) False XLOC_032937
TCONS_00063957 mRNA downstream 1059 30676995 ~ 30683637 (-) True XLOC_032923
TCONS_00063955 mRNA downstream 25848 30625945 ~ 30658848 (-) False XLOC_032922
TCONS_00063956 mRNA downstream 25941 30629993 ~ 30658755 (-) True XLOC_032922
TCONS_00063954 mRNA downstream 199687 30484005 ~ 30485009 (-) True XLOC_032921
TCONS_00063950 mRNA downstream 474318 30124197 ~ 30210378 (-) False XLOC_032917
TCONS_00063959 mRNA upstream 20800 30709926 ~ 30839763 (-) True XLOC_032925
TCONS_00063960 mRNA upstream 162419 30851545 ~ 30954268 (-) False XLOC_032926
TCONS_00063961 mRNA upstream 164742 30853868 ~ 30932078 (-) False XLOC_032926
TCONS_00063962 mRNA upstream 164845 30853971 ~ 30859656 (-) False XLOC_032926
TCONS_00063963 mRNA upstream 165800 30854926 ~ 30863046 (-) False XLOC_032926
TCONS_00063952 other downstream 481659 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063938 other downstream 1410288 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 1600045 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063923 other downstream 1600142 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063998 other upstream 1620562 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064000 other upstream 1705376 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00064015 other upstream 2754208 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 2989251 33678377 ~ 33681084 (-) True XLOC_032954
TCONS_00064020 other upstream 3036921 33726047 ~ 33726148 (-) True XLOC_032955

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_04384950_04386594.mRNA True 1481 mRNA 0.47 2 CI01000340 4384810 ~ 4386594 (-)