RNA id: TCONS_00064034


Basic Information

Item Value
RNA id TCONS_00064034
length 877
lncRNA type retained_intron
GC content 0.43
exon number 3
gene id XLOC_032958
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 33918813 ~ 33925432 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGAGGCGATACCCCTTTTCCAAGAAAGGAAGACGGAACCTTGCTGTATGACGACATAGACTATAAACTGACATGGGCTGCAATGGAAAAACTTGTGGGAAAGGGTCTTGTCAGAGCAATTGGACTCTCAAACTTCAACAGTAGGCAAATCGATGACATCTTATCAGTTGCAAGCATCAAACCCACAGTTTTACAGGTGGAGTCCCATCCATACCTTGCACAGGTTGAGCTGTTGTCTCACTGCCGGGATCGAGGTCTGGTAATGACCGCCTACAGTCCCCTAGGATCTCCTGACCGAGCCTGGAAGCATCCAGACGAGCCTGTGCTATTGGAGGAACCAGCCATTGCTGCGCTAGCCAAGAAATACAACAAGACCCCTGCACAAATTATCATCAGGTAAGTGTGTGCTTTTGCATTGGGTTTTTTTCCACTGATTATTTTGTCACATTGTTTCTTCATTGATGTTTGGCAGGTGGCAAACTCAACGAGGAGTAGTGACTATCCCAAAGAGCATTACACAGTCTCGGATTAAAGAGAATATCCAGGTTTCTGCAAGCTTCCCCTTAGTGTTGTATTATGTGGAGGGTTTATAATCACATATCATAACAATGCAATGCATTTACCTACAGGTGTTTGATTTTACTCTTGAATCTGAAGAAATGAGTCAGGTGACAGCTTTACACAGAGGCTGGCGTTACATTGTGCCAACTATTACTGTTGATGGTAAATCTGTACCCCGTGATGCAGGACATCCTCACTACCCGTTTAATGATTCCTATTAATTCACACTTCCACAAGATTCTGTGCCTTGGAACCAGCATTCATTAACTTCTCTGTGTACTTATAAACACATTAAACATTTTGTTATATACTGAAA

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0009070 serine family amino acid biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0018196 peptidyl-asparagine modification biological_process
GO:0140053 mitochondrial gene expression biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0018279 protein N-linked glycosylation via asparagine biological_process
GO:0006518 peptide metabolic process biological_process
GO:0006563 L-serine metabolic process biological_process
GO:0006564 L-serine biosynthetic process biological_process
GO:0032543 mitochondrial translation biological_process
GO:0110095 cellular detoxification of aldehyde biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005761 mitochondrial ribosome cellular_component
GO:0000313 organellar ribosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0004032 alditol molecular_function
GO:0008106 alcohol dehydrogenase (NADP+) activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-118 Predicted to enable alditol:NADP+ 1-oxidoreductase activity. Predicted to be involved in cellular detoxification of aldehyde. Predicted to be located in apical plasma membrane. Predicted to be active in cytosol. Orthologous to human AKR1A1 (aldo-keto reductase family 1 member A1).

Ensembl:

ensembl_id ENSDART00000147494

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065184 lncRNA downstream 2091 33912876 ~ 33916722 (-) False XLOC_032957
TCONS_00064029 lncRNA downstream 2093 33912876 ~ 33916720 (-) False XLOC_032957
TCONS_00064028 lncRNA downstream 3243 33912876 ~ 33915570 (-) False XLOC_032957
TCONS_00065183 lncRNA downstream 708425 33190582 ~ 33210388 (-) True XLOC_032952
TCONS_00065182 lncRNA downstream 789550 33118841 ~ 33129263 (-) True XLOC_032951
TCONS_00065185 lncRNA upstream 62176 33983870 ~ 33984665 (-) True XLOC_032960
TCONS_00065186 lncRNA upstream 236923 34158617 ~ 34177898 (-) True XLOC_032962
TCONS_00065187 lncRNA upstream 728101 34649795 ~ 34652139 (-) True XLOC_032965
TCONS_00064749 lncRNA upstream 895489 34817183 ~ 34818189 (-) True XLOC_032966
TCONS_00065188 lncRNA upstream 930200 34851894 ~ 34860590 (-) True XLOC_032968
TCONS_00064024 mRNA downstream 2025 33911154 ~ 33916788 (-) False XLOC_032957
TCONS_00064027 mRNA downstream 2057 33912341 ~ 33916756 (-) False XLOC_032957
TCONS_00064025 mRNA downstream 5629 33911155 ~ 33913184 (-) False XLOC_032957
TCONS_00064021 mRNA downstream 40148 33875137 ~ 33878665 (-) False XLOC_032956
TCONS_00064022 mRNA downstream 42894 33875292 ~ 33875919 (-) True XLOC_032956
TCONS_00064041 mRNA upstream 5135 33926829 ~ 33931696 (-) True XLOC_032959
TCONS_00064042 mRNA upstream 27586 33949280 ~ 33978760 (-) False XLOC_032960
TCONS_00064043 mRNA upstream 27825 33949519 ~ 33978622 (-) False XLOC_032960
TCONS_00064044 mRNA upstream 27825 33949519 ~ 33980881 (-) False XLOC_032960
TCONS_00064046 mRNA upstream 57829 33979523 ~ 34006917 (-) False XLOC_032960
TCONS_00064031 other downstream 2091 33913366 ~ 33916722 (-) False XLOC_032957
TCONS_00064030 other downstream 2099 33913187 ~ 33916714 (-) False XLOC_032957
TCONS_00064032 other downstream 2100 33913795 ~ 33916713 (-) False XLOC_032957
TCONS_00064023 other downstream 2111 33911154 ~ 33916702 (-) False XLOC_032957
TCONS_00064026 other downstream 2153 33912189 ~ 33916660 (-) False XLOC_032957
TCONS_00064052 other upstream 722559 34644253 ~ 34644370 (-) True XLOC_032964
TCONS_00064056 other upstream 904961 34826655 ~ 34832346 (-) False XLOC_032967
TCONS_00064055 other upstream 904961 34826655 ~ 34832346 (-) False XLOC_032967
TCONS_00064057 other upstream 911454 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064061 other upstream 1010256 34931950 ~ 34938693 (-) False XLOC_032969

Expression Profile

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