RNA id: TCONS_00006394


Basic Information

Item Value
RNA id TCONS_00006394
length 4263
RNA type mRNA
GC content 0.49
exon number 29
gene id XLOC_003244
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11021396 ~ 11109963 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATggttaGCTTGACCAATATCTCACTTTCCTTTCGCTTGTGTTTGTGTGACCCAGGTAAAGGTGTTTTCCGGTTGGAGAGTGTATCACAGAAGCGTTGTCTCTCAGCTGACTCCTCGGGTCTATCGATGTCCAGCTGTGACCCCTCGTCTCCTGCCCTGCTTTGGAAATGGGTGTCCCGGCACCGACTATACAATCTGGGCACCAGTCGATGCCTAGGGATCAACACGACCAAGCAGCATGACGTTGGCATCTTTGAGTGCGATGTTTCCCTCCCAAGCATGTGGTGGCGCTGTGGGGGTGGCATGTTGTATGGAGCGATGAATAATAAGCTAGTGGCAGTGGACTCAAAAGTGGTGGTGAGAAGAGGTGCTCTGCATCAGTGGAGGATTTTTGGGGCGGCTGGTGAAGGGCCATGTGCTTACCCATATGAAGACATTCACACACTTCAAGGAAACTCTCATGGCATGACCTGCTCCATACCCTTCAACTATAACAATAAATGGTTCTGGGACTGTACCTCAGAGGGCAGAGAGGACCGTCACCTCTGGTGTGCCACCACCAACCGCTATGATCAAGATGAGAAATGGGGTTTCTGTCCAAacccagtgtcagGCTGCAATGAATTCTGGGAGAGCCATCCAGAGCTGAATGCCTGTTACCAGTTTAACTTATACTCCATCCTAACCTGGAGCCAAGCTCTTACCTCCTGTCAAGCGCAAGGTGGAAGTCTTCTGTCCATCACACAGTCCAGTGAACAGAACTATATCAAAGGAAGACTCTCAGATATGGGTGTGATGGTCTGGATTGGATTAAACCATCTCAGTCAGCACGGGGGATGGCAGTGGTCTGATGGATCTCCTTTGAGCCTTGTCGGTTATACTGCAGATCTGAGCTCCACACCAGTGCAGCAGAACCAGCAGTGTGGGCTGTTTAACTCCACTCTCGGCTCCTGGCAGAGTCTGTCCTGTGAGTCAGCCCTGCCTTACATCTGCAAGAAAACCACCAACTACAGCCGGAATGCCGAGCCGCTTGATAACTGGCAATATAAGGAGACGATTTGTCCTGACGGTTGGCTGGACCACAATGGTTTCTGTTACCTGTACCTGAAGGAGAAGGCGAGCTGGGACAACTCTTCCAGTGCATGCAGAGCTCTTGAGGCAGAGCTGGTCAGCATCCACTCCCTGTCCCAACAGGAAGTACTGCTCAAACTGCTCTCCCTTGAACCCAACTCTAAGGTGTGGATCGGTTTGCACAAAGAGGCCACACTTCAAACAGTCCAATGGTCGGACAAATCTCCAGTCAAATTCATATCATGGAACTCACAGGAGCCTACACGTCGATATGATGACAAGCGCATCTGCGTTACCGCAGACCCGAAGCAAGGCAGATGGCAGTTCGAGGAGTGTGAAGAGCAAAACGCAGCGATTTGTAAAGCATCAGGGCTTGTTCCTCAGCGTCCTGCTGGAGAATGGGATGAAGGATGTCCAGAGGGCTGGAGAAGGAAGGACAACTGGTGTTATAAGATCACAGATCAGGAGCAGACATTTCAGGATGCTGTGAAAGGATATTATTGCAAATCACCTCTTGTCACGATAGAAAGCAGGTTTGAGCAGGCCTTTCTAAAAAGTCTGATCAGTGAAATGGGAGGCTCTGACTCTCAATACTATTGGACAGCTTTACAAGACCTGAACAGAACAGAAGAGTATCGCTGGCTGACTCAGAATGGCTCAACAACACCCCTCACCTACACCAACTGGAATCGACACCAGCCGGTGAGTTTAGGTGCGTGTGTGGTGATGTCTGGCGGTCGAGCTCTGGGTCACTGGGAGGTGAAAAACTGTCACACTTTTAAGGCTCTGGCTGTttgcaaacaggaagtgagtggAGATCATGACACTCTGACGCCTGCACCACACATAGATATAAATGCAGCCTGTCCAACTGGATGGGAGAGCCACAGTGGACTGTCTCACTGTTACAAGGTGTATCACGATGAAAAGATCTTGATGCAGCGTACTTGGACAGAGGCTGAGTTCTTCTGCCGAACTTTGGGTGCTGATCTGGCTAGTTTTCATCACTATGAAGATCAAGCTTTCGTCAAAAAAATCCTCTCTGTGATGTTCCAAAGTACAGAGGGTCGCTGGTTTTGGGTGGGCTTTACTAAGAGAAACCCTTCTTCTGATGGAGCCTGGGAGTGGTCAGATGGCACACCGGTGGTGACATCGTTCATTGAGGATATGAATGAAGCAGACTCTCACATGTGTGCTGCGTACAGTGACCTCACAAACACTCTCACTCCTCACTCCTGTGACTCCAAATATGAATGGATTTGCAAAGTGCCTCGAGGTGTGGAGCTGGTCAAGCCATACTGGTACAGCGACCAACATGCACCATGGTTCTTTTTCCACGAAGCTGAATATTACTTTGCCAGTAAGCAGTTTCCCTGGCAGTCTGTCTCTTTCACCTGCAAGATGATGGGCGCTGATCTGCTCTCTATCCACTCTAGTGAAGAACTGGACTTTGTCAAAGGACACATTACTAAGGTAACTTTATTTAAAGTTTGGACTGATGGATCTGCTCTGGATTACGAGAACTGGGAAAACGGTCAATTTTCCAGAAAGCCTGGTCAAAATTGTATCCAAATGTCGGCTCAGTCTGGTCAGTGGTCTGCAGGAAGCTGTAAAGATCCTCGTGGTTATGTGTGCAAACGCAGAACGGTGTCTGTGGTGGAGGTTCCACAAGAGCCTTACTATATCGGCAGCTGCCCAGAGAACTGGCTTTACTACGGACACAAGTGTCTGTATGTGTATCTCCCGGACCGTCCAGAAAAGGGGAAGAGCTGGCAGGAGGCTCAGGCTGTGTGCTCGGCCAATCAGGGCTCTCTGGTGTCCATCAAGGATGAGATCGAACAAGcCTATATCGTCATGATGCTTCATGGCTCGTCAGCGGGGGTTTGGATCGGTGTGCAAGGACGTTTTTCTTCCAAATGGAGCAACAAGAAGCCGATCGTCTACAGTAACTGGGAGAGGATTAATTATAGATCTCCTGAAGTACCTCATTGCACTTTCCTGTCCAACAGCCACAACTTCCGCTTGACAGGGATTTGGCAAGATGACGTCTGTACTGAAAAGATATATGGCTTTGTCTGCGAGAAAGCGCAAGACACCACCAAGCGTCCCACTCACTCCTATCACACTGCATCCTCTCTGGGCACATCTGAGTTCAGGAACCACACTTATCTGGTCGCCCATGGCAACATGAGCTGGTACGAGGCCCAGGAAAGGTGTTTGGTGAAGGGGGCAACACTCGTGAGCATCACAGACCCATTTCAGCAAGCTTATCTGACCTTTCTGATCAACAGACTGGACGCCCCGCATTGGATCGGCTTATACAGCACAGACGATGGCATATCCCACCAGTGGTCTGATGGAAGTGAGGGATGGTTTACTCATTGGGAAGATTCAAATTATTACCCTGAAGGGCCGGTGGGAGATGGAGGCTGCGTGTCTATGGATACTAATGGACGCTGGAGAGACAATGAATGTGACATGAGGTTATCAGGAGCGATATGCTACATACCCCCACCCAAGAGCATTGCTTTCTCCTTTGAAGTGGTGTGTCCTGATACCTGGGTGAAGTTTCGCGGGAGCTGCTATTATTTTAAAACCGTGATATCAAAGAAGACACAAGAAGAAGCCAGAAATCACTGTAAAGCAAATGgaaaTTCTTCTGAGCTTCTGACCATTCAGGATGATGAGGAGAGCCGCTTCTTCCTTAAAGAGATGTGGCATTACTACCAGGGCCCTCAGAATTTATGGCTGGGAGTCTTGTATAATGATAAAAATGGTGTTTTGGCTCGTTTGGATGGCTCTCAGCTGCAGTACACGAACTGGCGATCCAGAGTTCCAGATGAGCAGGAGATGAGGAAACAGCCATGTGTGTCTATGCGGGTATCAGATGCGGTTTGGCAGTTAGCAGACTGCACCGAACGACTGGGCTTCATCTGTAAAACCTCAACAGAGGTTGAAGTGGAGCCACTGAAAGGTCTCCACCAGGGCGTCATCTCAGTGGCTGCATTGGTGGCCATTTTACTGTTCGCAGTGGTAATCGGATCACTGTGGCTCCTTTACAAGAGAAACTCTCTGTGCTTCCGGAGGCTTCCAACGTTTGGCAGCGCCTATTACAGACAGACAAACTCCCAAGCCAGTGACCAAGATGAAAACGTTTTACTGCCAGAACTAGAGACCCAAGCAGGGGACTAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120323-1 Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PLA2R1 (phospholipase A2 receptor 1).

Ensembl:

ensembl_id ENSDART00000111091

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008552 lncRNA upstream 357900 10669135 ~ 10673008 (+) False XLOC_003241
TCONS_00008553 lncRNA upstream 357900 10669452 ~ 10673008 (+) True XLOC_003241
TCONS_00006385 lncRNA upstream 493505 10535456 ~ 10537403 (+) True XLOC_003239
TCONS_00008551 lncRNA upstream 1427838 9601745 ~ 9603070 (+) True XLOC_003237
TCONS_00008550 lncRNA upstream 1509149 9520744 ~ 9521759 (+) True XLOC_003236
TCONS_00006406 lncRNA downstream 129485 11239448 ~ 11240944 (+) True XLOC_003247
TCONS_00006410 lncRNA downstream 157943 11267906 ~ 11272314 (+) False XLOC_003248
TCONS_00006420 lncRNA downstream 243496 11353459 ~ 11380887 (+) True XLOC_003252
TCONS_00008391 lncRNA downstream 249458 11359421 ~ 11359715 (+) True XLOC_003253
TCONS_00006441 lncRNA downstream 394051 11504014 ~ 11513412 (+) False XLOC_003268
TCONS_00006389 mRNA upstream 10051 10975012 ~ 11020857 (+) False XLOC_003243
TCONS_00006391 mRNA upstream 11579 10984293 ~ 11019329 (+) True XLOC_003243
TCONS_00006390 mRNA upstream 42359 10975481 ~ 10988549 (+) False XLOC_003243
TCONS_00006388 mRNA upstream 70514 10909183 ~ 10960394 (+) True XLOC_003242
TCONS_00006386 mRNA upstream 480531 10541258 ~ 10550377 (+) False XLOC_003240
TCONS_00006396 mRNA downstream 10569 11120532 ~ 11193205 (+) False XLOC_003245
TCONS_00006395 mRNA downstream 10569 11120532 ~ 11193205 (+) False XLOC_003245
TCONS_00006397 mRNA downstream 42251 11152214 ~ 11193055 (+) True XLOC_003245
TCONS_00006398 mRNA downstream 65851 11175814 ~ 11181077 (+) True XLOC_003246
TCONS_00006400 mRNA downstream 90587 11200550 ~ 11262062 (+) False XLOC_003247
TCONS_00006384 other upstream 1132278 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006353 other upstream 3756530 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 3880002 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 3880268 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 3880542 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006409 other downstream 157927 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 161971 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 235840 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 262923 11372886 ~ 11373182 (+) True XLOC_003255
TCONS_00006426 other downstream 276399 11386362 ~ 11386658 (+) True XLOC_003257

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000056_01780748_01797031.mRNA True 3302 mRNA 0.50 24 CI01000056 1780748 ~ 1797042 (+)