RNA id: TCONS_00008390


Basic Information

Item Value
RNA id TCONS_00008390
length 293
lncRNA type sense_over
GC content 0.37
exon number 1
gene id XLOC_003244
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11021396 ~ 11109963 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCATATAACATTATAGTGAGTCACTATATGTTACGATATTGTTTTATGAGAAATGCTTTACTTGATATTTACTGTCGTTCATGTCTGTTCAGGTGTATCACGATGAAAAGATCTTGATGCAGCGTACTTGGACAGAGGCTGAGTTCTTCTGCCGAACTTTGGGTGCTGATCTGGCTAGTTTTCATCACTATGAAGATCAAGCTTTCGTCAAAAAAATCCTCTCTGTGATGTTCCAAAGGTTGGTTTACAAGTTTTTCTAGTTGGTTTATACAtcacttaaaggttcaggac

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008552 lncRNA upstream 392492 10669135 ~ 10673008 (+) False XLOC_003241
TCONS_00008553 lncRNA upstream 392492 10669452 ~ 10673008 (+) True XLOC_003241
TCONS_00006385 lncRNA upstream 528097 10535456 ~ 10537403 (+) True XLOC_003239
TCONS_00008551 lncRNA upstream 1462430 9601745 ~ 9603070 (+) True XLOC_003237
TCONS_00006382 lncRNA upstream 1543427 9511533 ~ 9522073 (+) False XLOC_003236
TCONS_00006406 lncRNA downstream 173656 11239448 ~ 11240944 (+) True XLOC_003247
TCONS_00006410 lncRNA downstream 202114 11267906 ~ 11272314 (+) False XLOC_003248
TCONS_00006420 lncRNA downstream 287667 11353459 ~ 11380887 (+) True XLOC_003252
TCONS_00008391 lncRNA downstream 293629 11359421 ~ 11359715 (+) True XLOC_003253
TCONS_00006441 lncRNA downstream 438222 11504014 ~ 11513412 (+) False XLOC_003268
TCONS_00006393 mRNA upstream 26022 11021735 ~ 11039478 (+) False XLOC_003244
TCONS_00006389 mRNA upstream 44643 10975012 ~ 11020857 (+) False XLOC_003243
TCONS_00006391 mRNA upstream 46171 10984293 ~ 11019329 (+) True XLOC_003243
TCONS_00006390 mRNA upstream 76951 10975481 ~ 10988549 (+) False XLOC_003243
TCONS_00006388 mRNA upstream 105106 10909183 ~ 10960394 (+) True XLOC_003242
TCONS_00006396 mRNA downstream 54740 11120532 ~ 11193205 (+) False XLOC_003245
TCONS_00006395 mRNA downstream 54740 11120532 ~ 11193205 (+) False XLOC_003245
TCONS_00006397 mRNA downstream 86422 11152214 ~ 11193055 (+) True XLOC_003245
TCONS_00006398 mRNA downstream 110022 11175814 ~ 11181077 (+) True XLOC_003246
TCONS_00006400 mRNA downstream 134758 11200550 ~ 11262062 (+) False XLOC_003247
TCONS_00006384 other upstream 1166870 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006353 other upstream 3791122 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 3914594 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 3914860 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 3915134 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006409 other downstream 202098 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 206142 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 280011 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 307094 11372886 ~ 11373182 (+) True XLOC_003255
TCONS_00006426 other downstream 320570 11386362 ~ 11386658 (+) True XLOC_003257

Expression Profile

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