RNA id: TCONS_00006406


Basic Information

Item Value
RNA id TCONS_00006406
length 595
lncRNA type retained_intron
GC content 0.40
exon number 2
gene id XLOC_003247
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11200550 ~ 11262062 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgattttattctagccaaaataaaacaaataagactttctctagaggaaaaaatattatcagacatactgtgaaaatgtccacgctctgttaaacatcatctaggaaatatttaataataaaaaaattaattaaaaaaaatcaaaggcgcgctaataattctgacttaaactgtgtatgtatatataaaacttCTTGCTCATTTATGAAATTATGGGTGTTCCTCACACTAATATGTATCACAGCATCTAAAAGATTCTGCTTAATTTTCCACCTGATTCTGTTTTGATCCACAAAAGCTCATCCACAGTCACTCATATTGTTTTTCCATCTTGATGAATGttgttctctctctttctgtctgtgtgATCAGCTACTCCCTCTGCTCCGTATGGCATCAGCCTGCTCAACTGTAATGGATCCTCCATGACTCTGGCCTGGAAACGCCCCAAACACACCGGCGGCTCTAAGATCAGCTCTTACTACCTGGACAAGCGTGAGGCGGGATCAGTCGACTGGAAGGAGGTCAGCCCCAGCCCGGCTGTCCACAGGATTTTCACGGTGGAAAATCTGACCGGTGGAGTGTTCTATGAGTT

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0030017 sarcomere cellular_component
GO:0031430 M band cellular_component
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6201 Predicted to enable actin filament binding activity. Predicted to be involved in muscle contraction. Predicted to be active in M band. Orthologous to human MYOM2 (myomesin 2).

Ensembl:

ensembl_id ENSDART00000158682

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008390 lncRNA upstream 173656 11065500 ~ 11065792 (+) True XLOC_003244
TCONS_00008552 lncRNA upstream 566440 10669135 ~ 10673008 (+) False XLOC_003241
TCONS_00008553 lncRNA upstream 566440 10669452 ~ 10673008 (+) True XLOC_003241
TCONS_00006385 lncRNA upstream 702045 10535456 ~ 10537403 (+) True XLOC_003239
TCONS_00008551 lncRNA upstream 1636378 9601745 ~ 9603070 (+) True XLOC_003237
TCONS_00006410 lncRNA downstream 26962 11267906 ~ 11272314 (+) False XLOC_003248
TCONS_00006420 lncRNA downstream 112515 11353459 ~ 11380887 (+) True XLOC_003252
TCONS_00008391 lncRNA downstream 118477 11359421 ~ 11359715 (+) True XLOC_003253
TCONS_00006441 lncRNA downstream 263070 11504014 ~ 11513412 (+) False XLOC_003268
TCONS_00006446 lncRNA downstream 263423 11504367 ~ 11513412 (+) True XLOC_003268
TCONS_00006404 mRNA upstream 24481 11201196 ~ 11214967 (+) False XLOC_003247
TCONS_00006396 mRNA upstream 46243 11120532 ~ 11193205 (+) False XLOC_003245
TCONS_00006395 mRNA upstream 46243 11120532 ~ 11193205 (+) False XLOC_003245
TCONS_00006397 mRNA upstream 46393 11152214 ~ 11193055 (+) True XLOC_003245
TCONS_00006398 mRNA upstream 58371 11175814 ~ 11181077 (+) True XLOC_003246
TCONS_00006407 mRNA downstream 26549 11267493 ~ 11274358 (+) False XLOC_003248
TCONS_00006408 mRNA downstream 26885 11267829 ~ 11274917 (+) False XLOC_003248
TCONS_00006411 mRNA downstream 26964 11267908 ~ 11272447 (+) False XLOC_003248
TCONS_00006413 mRNA downstream 31015 11271959 ~ 11274119 (+) False XLOC_003248
TCONS_00006414 mRNA downstream 31546 11272490 ~ 11274919 (+) True XLOC_003248
TCONS_00006384 other upstream 1340818 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006353 other upstream 3965070 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 4088542 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 4088808 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 4089082 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006409 other downstream 26946 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 30990 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 104859 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 131942 11372886 ~ 11373182 (+) True XLOC_003255
TCONS_00006426 other downstream 145418 11386362 ~ 11386658 (+) True XLOC_003257

Expression Profile

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