RNA id: TCONS_00006412


Basic Information

Item Value
RNA id TCONS_00006412
length 806
RNA type nonsense_mediated_decay
GC content 0.47
exon number 7
gene id XLOC_003248
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11267493 ~ 11274919 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttcaaGCTCTATTGCAAAGTCAAAAATGGCTCGTATGAATAGACCTGCCCCAGTGGAGATCACTTACAAAAACATGAGATTCCTCATTACCCACAATCCCACTAATGCCACGCTTCACAAATTCATCGAGGAACTGAAGAAATATGGGGTGACAACGGTTGTTAGAGTGTGCGAGGCCACGTATGATGCAAACCTGGTTGTCAAGGAGGGCATTCAGGTTCTGGATTGGCCCTTTGATGATGGAGCTCCTCCCTCCAACCAGATTGTTGATGATTGGCTGAATCTTCTTCGGGTTAAGTTCAGGGAGGAGCCAGGATGCTGCATTGCCGTGCATTGTGTGGCAGGCCTTGGAAGAGCCCCAGTGCTGGTTGCCCTGGCCCTGATTGAGTGTGGGATGAAGTATGAGGATGCTGTTCAATTCATTCGACAAAAGCGGCGTGGAGCATTTAACAGCAAGCAGCTTTTCTACCTGGAAAAATATCGTCCCAAAATGCGTCTTCGATTCAAGGATTCCAACGGACATCGCACCAACTGCTGCATTCATGTCCCATTCCCTCCTCTTCATTTCTGTATTTCCTGTGGAGAACCTCTGTCAGCAAGGTGAAGTGCTTGTTTGATGAACATGAGCTTAGTGTTTTGCGAGGAAGTCGGTTGGTGAACATGGTCAAATCCCGCCTCTGCCAAACTCGTACAGAAAGACACCGTCTGGTGGAGGAGTTCTCAATGGCATTTGGAGAGGGTTCTTGATGtcttttgcagaaaaaaaaataggaagAGATTCTGAAGAAAAATCAAGGAAAAAGAAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041121-11 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Is expressed in gut; myotome; nervous system; and pharyngeal arch. Orthologous to human PTP4A1 (protein tyrosine phosphatase 4A1).

Ensembl:

ensembl_id ENSDART00000166489

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006406 lncRNA upstream 30990 11239448 ~ 11240944 (+) True XLOC_003247
TCONS_00008390 lncRNA upstream 206142 11065500 ~ 11065792 (+) True XLOC_003244
TCONS_00008552 lncRNA upstream 598926 10669135 ~ 10673008 (+) False XLOC_003241
TCONS_00008553 lncRNA upstream 598926 10669452 ~ 10673008 (+) True XLOC_003241
TCONS_00006385 lncRNA upstream 734531 10535456 ~ 10537403 (+) True XLOC_003239
TCONS_00006420 lncRNA downstream 78859 11353459 ~ 11380887 (+) True XLOC_003252
TCONS_00008391 lncRNA downstream 84821 11359421 ~ 11359715 (+) True XLOC_003253
TCONS_00006441 lncRNA downstream 229414 11504014 ~ 11513412 (+) False XLOC_003268
TCONS_00006446 lncRNA downstream 229767 11504367 ~ 11513412 (+) True XLOC_003268
TCONS_00006447 lncRNA downstream 313478 11588078 ~ 11590676 (+) True XLOC_003269
TCONS_00006400 mRNA upstream 9872 11200550 ~ 11262062 (+) False XLOC_003247
TCONS_00006399 mRNA upstream 9872 11200550 ~ 11262062 (+) False XLOC_003247
TCONS_00006402 mRNA upstream 11064 11201096 ~ 11260870 (+) False XLOC_003247
TCONS_00006401 mRNA upstream 11064 11201096 ~ 11260870 (+) False XLOC_003247
TCONS_00006403 mRNA upstream 11079 11201190 ~ 11260855 (+) False XLOC_003247
TCONS_00006415 mRNA downstream 28858 11303458 ~ 11319853 (+) False XLOC_003249
TCONS_00006416 mRNA downstream 28900 11303500 ~ 11319175 (+) True XLOC_003249
TCONS_00006418 mRNA downstream 72431 11347031 ~ 11348705 (+) False XLOC_003251
TCONS_00006419 mRNA downstream 72577 11347177 ~ 11348146 (+) True XLOC_003251
TCONS_00006421 mRNA downstream 86041 11360641 ~ 11362457 (+) False XLOC_003254
TCONS_00006384 other upstream 1373304 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006353 other upstream 3997556 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 4121028 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 4121294 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 4121568 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006417 other downstream 71203 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 98286 11372886 ~ 11373182 (+) True XLOC_003255
TCONS_00006426 other downstream 111762 11386362 ~ 11386658 (+) True XLOC_003257
TCONS_00006431 other downstream 143433 11418033 ~ 11418323 (+) True XLOC_003260
TCONS_00006434 other downstream 154793 11429393 ~ 11429689 (+) True XLOC_003262

Expression Profile

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