RNA id: TCONS_00006415


Basic Information

Item Value
RNA id TCONS_00006415
length 1979
RNA type mRNA
GC content 0.42
exon number 13
gene id XLOC_003249
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11303458 ~ 11319853 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGTAACTTGCTCTTTGTCCGCGGATTCTTACTctgttatctttttattttgaaatcggAACCGCCGCCGTTGTCCTGGtactgaaaacaacaacaagcaAACCTGGCCATTTAAAGATGGAGAGTGTGGACTTTTCCGAGGAGGAGATCCAGGAGCAGTTGGCTGCGCTTGGATACAGTCATATTTCCAAACAAAGACTGCGCGAATTCAAGCGagATCTAGATCATCTGATCCGTCATGAAAAGTCTAGGAGTCAGAGCTCTAGTGACTGGACTTCTCCAGCATCACAAAGCAGAACCAGCAAAAGTCCACCTGCCCTTATTAAGGAAAAGGTTCAGCTGAACAACATCGGCCCCAGTTTTAACTACGTTCCCTTCAACACCAGCTCAGCAGCTCAACAGAGAGAGATTTTCACCTCCACCTTTAATGAGGAAGATCATGAAGACGCTGCACCCAACAGATTGGAGACTGAGGAAAGACCCTCAGAAATATTTCAATCAGTTTTGGATGATAGTGAGACAACAAGTCCTGATGGAGATCATCATACTCATATGAAGCCTATGATTAAAAGGAAAGTGCTAAGGAAGCATCAAGGTCGGTCTCGTGTCTGTGATGAGTCTACACATAGTGAAGATTCTGGTACAGTCAGTGAACTGGAGGAGCGTTTGGATCAGATGCGGATTCCTACTTCTCGTGTGCATTATGACTCAGAGAGTGAAGAAACAGAAAGCTATACTGACAGAACCAGCTCAGTGACAGAGGAATCCTCAAGTGCTTTCCAACAATACATCAGAGGCATGacacGATCACACAGTGAGAGTGATATCCGACCTCGTCCAAAGTCATTTATTAGGCCAGTTTTTGATCATCCTCACACAAGGAACTTGAAGAAAACTGATCCAGTTGCAAAGTATCTTCAGTATAAGCAGGAGTGGGAGATGTTTAAGCCTCCAGGAGAGAAGAGCAGGAAGGAGCTACATTGGGCCATCAGGGAACAACTTATGTATCAGCCTCCACCACCGAGACCTCAGAAGACATTCATCCCCAACAATTATGTGGTTCCGACAGAGAAGAAGCGATCAGCACTAAGATGGGAGATCAGACATGATTTAGCACACTGCATTATCCCTGCCAAAATCTCCTATCCTTAACAGACTCTTCCACCTACGCCTTATCTTTTATATTgaattaatactattatttattcaaatcatctagctttttttttactttatgaaGCATGTGAAATGAGACGCCCAGATCATTGTTTttatgaaataaacattttaatccaCTGAAGTCCATGCTGTTCATGGCAGGTCGCTGTATGGGAGTTTGAAGGGGTACAGGGGAGTGTAACGCACATCATGCCAGAGAAGCTTCTTTTCAAGGAATTTGACAGCCTCCAGAGTGAGAACCAGACTCTCGTGTTTCAACAAACTGTGGACGTTGAGACctgtaaaaatgaaaaagttGCATATATAGTTTGCGTTCACATTTTCCGGTCAGTGGTTCTCCATTTCAGTCCCTGTGCACTACTATTTTGCAAGTTTCTTTTCACTTCAGATCTTTTCTAATTTGACTAAATGTCCTATGAAGTGAACAGGATCATGTTTCCAGTTTAAAGTGAGAGTCTGCATTTCGTTCAAAATGGCATTTTAGTGTGTAATATGTGAAGTttgatttcccagtgatgggttgcagctggaagggcatctgctgcgtaaaacatatgctacataagttggcggttcattctgctgtggcgacctctgattaataaaggtactgagccgaaaagaaaatgaataaatgaatgtgaaGTTTGATTACAGGGATATTTTCTGTATTAGTCAGTCACGCAACACATGAAcatgaatttcattcattcattttctttagtctctttatttgaACATGAATTTAGTGATGCACTTTATATCAGTCATCATGTTTCCatgattcaagagttcacac

Function

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0005814 centriole cellular_component
GO:0097730 non-motile cilium cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141222-88 Predicted to be involved in cilium assembly. Predicted to act upstream of or within cell projection organization. Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Predicted to be active in centriole and non-motile cilium. Human ortholog(s) of this gene implicated in hydrolethalus syndrome 1. Orthologous to human HYLS1 (HYLS1 centriolar and ciliogenesis associated).

Ensembl:

ensembl_id ENSDART00000162486

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006410 lncRNA upstream 31144 11267906 ~ 11272314 (+) False XLOC_003248
TCONS_00006406 lncRNA upstream 62514 11239448 ~ 11240944 (+) True XLOC_003247
TCONS_00008390 lncRNA upstream 237666 11065500 ~ 11065792 (+) True XLOC_003244
TCONS_00008552 lncRNA upstream 630450 10669135 ~ 10673008 (+) False XLOC_003241
TCONS_00006420 lncRNA downstream 33606 11353459 ~ 11380887 (+) True XLOC_003252
TCONS_00008391 lncRNA downstream 39568 11359421 ~ 11359715 (+) True XLOC_003253
TCONS_00006441 lncRNA downstream 184161 11504014 ~ 11513412 (+) False XLOC_003268
TCONS_00006446 lncRNA downstream 184514 11504367 ~ 11513412 (+) True XLOC_003268
TCONS_00006447 lncRNA downstream 268225 11588078 ~ 11590676 (+) True XLOC_003269
TCONS_00006414 mRNA upstream 28539 11272490 ~ 11274919 (+) True XLOC_003248
TCONS_00006408 mRNA upstream 28541 11267829 ~ 11274917 (+) False XLOC_003248
TCONS_00006407 mRNA upstream 29100 11267493 ~ 11274358 (+) False XLOC_003248
TCONS_00006413 mRNA upstream 29339 11271959 ~ 11274119 (+) False XLOC_003248
TCONS_00006411 mRNA upstream 31011 11267908 ~ 11272447 (+) False XLOC_003248
TCONS_00006418 mRNA downstream 27178 11347031 ~ 11348705 (+) False XLOC_003251
TCONS_00006419 mRNA downstream 27324 11347177 ~ 11348146 (+) True XLOC_003251
TCONS_00006421 mRNA downstream 40788 11360641 ~ 11362457 (+) False XLOC_003254
TCONS_00006422 mRNA downstream 40946 11360799 ~ 11361768 (+) True XLOC_003254
TCONS_00006424 mRNA downstream 54168 11374021 ~ 11375944 (+) False XLOC_003256
TCONS_00006412 other upstream 28858 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006409 other upstream 28901 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006384 other upstream 1404828 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006353 other upstream 4029080 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 4152552 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006417 other downstream 25950 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 53033 11372886 ~ 11373182 (+) True XLOC_003255
TCONS_00006426 other downstream 66509 11386362 ~ 11386658 (+) True XLOC_003257
TCONS_00006431 other downstream 98180 11418033 ~ 11418323 (+) True XLOC_003260
TCONS_00006434 other downstream 109540 11429393 ~ 11429689 (+) True XLOC_003262

Expression Profile

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