Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006416 |
| length | 1328 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 12 |
| gene id | XLOC_003249 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 11303458 ~ 11319853 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0060271 | cilium assembly | biological_process |
| GO:0005814 | centriole | cellular_component |
| GO:0097730 | non-motile cilium | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-141222-88 | Predicted to be involved in cilium assembly. Predicted to act upstream of or within cell projection organization. Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Predicted to be active in centriole and non-motile cilium. Human ortholog(s) of this gene implicated in hydrolethalus syndrome 1. Orthologous to human HYLS1 (HYLS1 centriolar and ciliogenesis associated). |
| ensembl_id | ENSDART00000160703 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006410 | lncRNA | upstream | 31186 | 11267906 ~ 11272314 (+) | False | XLOC_003248 |
| TCONS_00006406 | lncRNA | upstream | 62556 | 11239448 ~ 11240944 (+) | True | XLOC_003247 |
| TCONS_00008390 | lncRNA | upstream | 237708 | 11065500 ~ 11065792 (+) | True | XLOC_003244 |
| TCONS_00008552 | lncRNA | upstream | 630492 | 10669135 ~ 10673008 (+) | False | XLOC_003241 |
| TCONS_00006420 | lncRNA | downstream | 34284 | 11353459 ~ 11380887 (+) | True | XLOC_003252 |
| TCONS_00008391 | lncRNA | downstream | 40246 | 11359421 ~ 11359715 (+) | True | XLOC_003253 |
| TCONS_00006441 | lncRNA | downstream | 184839 | 11504014 ~ 11513412 (+) | False | XLOC_003268 |
| TCONS_00006446 | lncRNA | downstream | 185192 | 11504367 ~ 11513412 (+) | True | XLOC_003268 |
| TCONS_00006447 | lncRNA | downstream | 268903 | 11588078 ~ 11590676 (+) | True | XLOC_003269 |
| TCONS_00006414 | mRNA | upstream | 28581 | 11272490 ~ 11274919 (+) | True | XLOC_003248 |
| TCONS_00006408 | mRNA | upstream | 28583 | 11267829 ~ 11274917 (+) | False | XLOC_003248 |
| TCONS_00006407 | mRNA | upstream | 29142 | 11267493 ~ 11274358 (+) | False | XLOC_003248 |
| TCONS_00006418 | mRNA | downstream | 27856 | 11347031 ~ 11348705 (+) | False | XLOC_003251 |
| TCONS_00006419 | mRNA | downstream | 28002 | 11347177 ~ 11348146 (+) | True | XLOC_003251 |
| TCONS_00006421 | mRNA | downstream | 41466 | 11360641 ~ 11362457 (+) | False | XLOC_003254 |
| TCONS_00006422 | mRNA | downstream | 41624 | 11360799 ~ 11361768 (+) | True | XLOC_003254 |
| TCONS_00006424 | mRNA | downstream | 54846 | 11374021 ~ 11375944 (+) | False | XLOC_003256 |
| TCONS_00006412 | other | upstream | 28900 | 11271934 ~ 11274600 (+) | False | XLOC_003248 |
| TCONS_00006409 | other | upstream | 28943 | 11267890 ~ 11274557 (+) | False | XLOC_003248 |
| TCONS_00006384 | other | upstream | 1404870 | 9898513 ~ 9898630 (+) | True | XLOC_003238 |
| TCONS_00006353 | other | upstream | 4029122 | 7262004 ~ 7274378 (+) | False | XLOC_003222 |
| TCONS_00006343 | other | upstream | 4152594 | 7150820 ~ 7150906 (+) | True | XLOC_003218 |
| TCONS_00006417 | other | downstream | 26628 | 11345803 ~ 11346099 (+) | True | XLOC_003250 |
| TCONS_00006423 | other | downstream | 53711 | 11372886 ~ 11373182 (+) | True | XLOC_003255 |
| TCONS_00006426 | other | downstream | 67187 | 11386362 ~ 11386658 (+) | True | XLOC_003257 |
| TCONS_00006431 | other | downstream | 98858 | 11418033 ~ 11418323 (+) | True | XLOC_003260 |
| TCONS_00006434 | other | downstream | 110218 | 11429393 ~ 11429689 (+) | True | XLOC_003262 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01038365_00000250_00002681.mRNA | True | 1058 | mRNA | 0.40 | 5 | CI01038365 | 250 ~ 2895 (-) |
