RNA id: TCONS_00064264


Basic Information

Item Value
RNA id TCONS_00064264
length 2093
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_033071
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40822587 ~ 40832245 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAGAGCCGAGGAATTTAGTTTACACTTTTATTTCTGATATCAAAGTTAATAAGTTGATATTATCAAAATTCATCAAATTACAGTAAGTTGGTTGTCTGACGACATCAAGCTGGTTGTTTTGACCAGCAGCGTCGCTGTCAGCAGTTCAAAGTCTGCGCATTCACTCTCTGTTACCCAACCGCGGTGTTGATCCAGAGATGACAGATTTTCCCAAAACACTGAACTTTAACGTCGGTGTCCTCGGCCATGTGGACAGCGGGAAAACATCTCTCGCCCGGGCGCTGAGCAGCACCGCATCCACTGCAGCCTTCGACAAGAACCCGCAGTCCAAAGAGCGGGGCATAACGCTGGATCTCGGCTTCAGTGCGTTCACGGTGCCGTTACCGGAGCACCTGAGGGAGTCCTGCGGGGAAAAACAATACGACAGTCTGCAGTTCACATTGGTGGACTGTCCAGGACATGCCTCCCTTATACGCACTATCATCGGGGGTGCTCAGATCATTGATCTTATGATGTTGGTGGTTGACGTTGTGAAAGGAATGCAAACACAAACAGCAGAGTGCCTTTTGATTGGTCAGCTCACCTGCTCTCGTATGGTCGTCATCCTTAACAAAACAGACCTGTTGCCTAGCGACAAAAGACAAGTGGCTATTGACAAAATGACCAAGAGAATGCACAAAACTCTGGAGAACACAAGATTTAAAGACTGCCCTATTATTGCTGTGGCAGCAAAGCCAGGTGGTCCAGAGGCCCCAGATACAGACGAGCCTCAGGGAATTACTGAACTCATAGATTTACTAAAGGCCCAGTCGTTCCTTCCTCATAGAGATCCGTCAGGCTCTCTTTTGATGGCTGTAGATCACTGCTTCTCCATCCGTGGCCAGGGAACGGTCATTACTGGCACAATCCTGCAAGGGTCACTCAGTGTTAATGATAATGTGGAGATACCAGCGTTAAAGGTCACTCGGAAGGTCAAATCTGTGCAGATGTTTCGCAAACCGGTGGCTAGTGCTATGCAGGGAGATCGGGTTGGCGTGTGCGTGACACAGTTTGACCCAAAACTGCTAGAACGAGGTGTTGTTTGCACACCAGGTTCATTGCAGACTCTTTATGCCGCTATTATATCCGTCCAAAAGATTGAATACTATCGCGGAGCACTTAACAGCCGTGCAAAGTTTCACATCACCGTTGGACATGAAACTGTTATGGCGCGCATCTCCTTTTTCAATCGAGTGCTTCCAGCCAATGAAAACGGAGACTCTAAGCCCACATCTCAAGAGCAAAGTGCAAACTCTTTCTCATTTGACTGGGAGTTTCATCACCTGGATGAACATTTGACTAGTCAGGCAGAAGGTGGGAAAGGGGAACCACAGCAGTGGGCTTTGCTGGAGTTTGAACGACCGGTCACATGTCCACCTCTTTGCTTAGTGATTGGGTCACGACTGGACTCAGATATTCATGGTAACACTTGCAGGCTCGCTTTTCACGGAAAGCTTCTGGAAGGCTTTGAGGACAAAAACTACACGGAGACAGCACTGCCTCGGCTCAAAATCAGCAAAGACAAGCAGAAAGAAGGAGCAGTGGAACGGGTGACAGATGACTATACTGTGATTGGTCGAAACCTGTTTAAGAAGGAGACAAACCTTCAGCTATTCGTGGGTTTAAAAGTCACACTGTCAACAGGGGAAGCAGGGTCCATTGAAGGTGGATTCGGCCAAAGTGGAAAGATCAAAATACGAATACCAGAGGGACTGAAAGAAGAAACCAAGCAGCTTCTCTCCTCTTCCTCTAAGAAGAAGGGAAAGGGTGGGTCAAAAAATGAATCCCCCAAATTGGAGGAAGCCAAGCCAGATGCTCAGCCAGTCACCATACACCTGAACTTTAAACGCTATATATATGATCCCCACAAAAAGATGGTACAGTCCTGACCCTCAGACTGAAATCTACTAAAACTAGGATGTGCAGCAGGAAACTTTGGAGTTTAATTATgatatttagcattttttgttACTCCTTCAAATATGGAACATTAAAATCATCCGAAAAAAGAGCAGGATTAAGGTTCCCTGCTAATAAAACAACTTGAGGACaa

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0001514 selenocysteine incorporation biological_process
GO:0006414 translational elongation biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-051120-72 Predicted to enable translation elongation factor activity. Predicted to be involved in selenocysteine incorporation. Predicted to act upstream of or within translation. Orthologous to human EEFSEC (eukaryotic elongation factor, selenocysteine-tRNA specific).

Ensembl:

ensembl_id ENSDART00000007783

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065212 lncRNA downstream 161263 40659954 ~ 40661324 (-) True XLOC_033061
TCONS_00065211 lncRNA downstream 163487 40654032 ~ 40659100 (-) False XLOC_033057
TCONS_00065210 lncRNA downstream 193426 40625631 ~ 40629161 (-) True XLOC_033056
TCONS_00065209 lncRNA downstream 193465 40625631 ~ 40629122 (-) False XLOC_033056
TCONS_00064236 lncRNA downstream 249355 40572675 ~ 40573232 (-) False XLOC_033053
TCONS_00065213 lncRNA upstream 23894 40856139 ~ 40863887 (-) False XLOC_033074
TCONS_00065214 lncRNA upstream 23894 40856139 ~ 40864078 (-) False XLOC_033074
TCONS_00065215 lncRNA upstream 28051 40860296 ~ 40863721 (-) True XLOC_033074
TCONS_00065216 lncRNA upstream 131441 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00064283 lncRNA upstream 193983 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00064256 mRNA downstream 44293 40743367 ~ 40778294 (-) False XLOC_033067
TCONS_00064262 mRNA downstream 50774 40769517 ~ 40771813 (-) True XLOC_033069
TCONS_00064259 mRNA downstream 53861 40761626 ~ 40768726 (-) False XLOC_033067
TCONS_00064260 mRNA downstream 53933 40762429 ~ 40768654 (-) False XLOC_033067
TCONS_00064258 mRNA downstream 66449 40745667 ~ 40756138 (-) True XLOC_033068
TCONS_00064265 mRNA upstream 8911 40841156 ~ 40842768 (-) True XLOC_033072
TCONS_00064266 mRNA upstream 11541 40843786 ~ 40854458 (-) False XLOC_033073
TCONS_00064267 mRNA upstream 11714 40843959 ~ 40851499 (-) True XLOC_033073
TCONS_00064268 mRNA upstream 45149 40877394 ~ 40884453 (-) False XLOC_033075
TCONS_00064269 mRNA upstream 45645 40877890 ~ 40882880 (-) False XLOC_033075
TCONS_00064263 other downstream 2821 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 54916 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 155124 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064244 other downstream 164915 40654729 ~ 40657672 (-) True XLOC_033057
TCONS_00064277 other upstream 114112 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064287 other upstream 248052 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064312 other upstream 1577212 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 1577979 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064314 other upstream 1583121 42415366 ~ 42415879 (-) True XLOC_033096

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_09882272_09889768.mRNA True 1906 mRNA 0.48 7 CI01000340 9882103 ~ 9889768 (-)
bowfin (Amia calva) AMCG00017340 True 1779 mRNA 0.63 9 CM030122.1 54153607 ~ 54170510 (+)