RNA id: TCONS_00006420


Basic Information

Item Value
RNA id TCONS_00006420
length 498
lncRNA type lincRNA
GC content 0.25
exon number 2
gene id XLOC_003252
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11353459 ~ 11380887 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

actttctagattaaaactgcatttggcataatactctataactaatttatcaataaaaatgCCATTTTGTACTGGAAGCTTTTTCGCCGTCAATATCAGGtggtattaaaaaataattaacaatgtcatagtcagatataattaaaacaaacatgatGAAGCCAGTAAATCTGGTTGTGACCTACCCGTGTGTTACTTTTGTTTCTGATGGGGCCAAAAATTATAATGTGCCatttatgtttaaagtaaaattattctatatatatattttttaatttgatatattttcaattaaattcaatatatttctgtctaaggcatatttttaaaatatagacatgaaattgagatgatttttgtatttttgtttacaaataaactttcTGAAGTCTGCTAGTaaacttttaattattacttACTATTAATAATGCATAGTCATCATACATCTCTAAATCTTTATTTCttcagttttacatttagaaagacaaatcaaagttt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000171481

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006410 lncRNA upstream 81145 11267906 ~ 11272314 (+) False XLOC_003248
TCONS_00006406 lncRNA upstream 112515 11239448 ~ 11240944 (+) True XLOC_003247
TCONS_00008390 lncRNA upstream 287667 11065500 ~ 11065792 (+) True XLOC_003244
TCONS_00008552 lncRNA upstream 680451 10669135 ~ 10673008 (+) False XLOC_003241
TCONS_00008553 lncRNA upstream 680451 10669452 ~ 10673008 (+) True XLOC_003241
TCONS_00006441 lncRNA downstream 123127 11504014 ~ 11513412 (+) False XLOC_003268
TCONS_00006446 lncRNA downstream 123480 11504367 ~ 11513412 (+) True XLOC_003268
TCONS_00006447 lncRNA downstream 207191 11588078 ~ 11590676 (+) True XLOC_003269
TCONS_00006451 lncRNA downstream 396480 11777367 ~ 11780863 (+) True XLOC_003270
TCONS_00006452 lncRNA downstream 411521 11792408 ~ 11796299 (+) True XLOC_003271
TCONS_00006418 mRNA upstream 4754 11347031 ~ 11348705 (+) False XLOC_003251
TCONS_00006419 mRNA upstream 5313 11347177 ~ 11348146 (+) True XLOC_003251
TCONS_00006415 mRNA upstream 33606 11303458 ~ 11319853 (+) False XLOC_003249
TCONS_00006416 mRNA upstream 34284 11303500 ~ 11319175 (+) True XLOC_003249
TCONS_00006414 mRNA upstream 78540 11272490 ~ 11274919 (+) True XLOC_003248
TCONS_00006427 mRNA downstream 6622 11387509 ~ 11389462 (+) False XLOC_003258
TCONS_00006428 mRNA downstream 6795 11387682 ~ 11388681 (+) True XLOC_003258
TCONS_00006429 mRNA downstream 27005 11407892 ~ 11409744 (+) False XLOC_003259
TCONS_00006430 mRNA downstream 27107 11407994 ~ 11408963 (+) True XLOC_003259
TCONS_00006432 mRNA downstream 38299 11419186 ~ 11421106 (+) False XLOC_003261
TCONS_00006417 other upstream 7360 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006412 other upstream 78859 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006409 other upstream 78902 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006384 other upstream 1454829 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006353 other upstream 4079081 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006426 other downstream 5475 11386362 ~ 11386658 (+) True XLOC_003257
TCONS_00006431 other downstream 37146 11418033 ~ 11418323 (+) True XLOC_003260
TCONS_00006434 other downstream 48506 11429393 ~ 11429689 (+) True XLOC_003262
TCONS_00006437 other downstream 60573 11441460 ~ 11441756 (+) True XLOC_003264
TCONS_00006438 other downstream 69268 11450155 ~ 11450442 (+) True XLOC_003265