Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00064288 |
| length | 855 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 5 |
| gene id | XLOC_033082 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 41080003 ~ 41091448 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | biological_process |
| GO:0045292 | mRNA cis splicing, via spliceosome | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030616-631 | Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to human SRSF3 (serine and arginine rich splicing factor 3). |
| ensembl_id | ENSDART00000143944 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00064283 | lncRNA | downstream | 53600 | 41026228 ~ 41028618 (-) | True | XLOC_033080 |
| TCONS_00065216 | lncRNA | downstream | 113877 | 40963686 ~ 40968341 (-) | True | XLOC_033077 |
| TCONS_00065214 | lncRNA | downstream | 218140 | 40856139 ~ 40864078 (-) | False | XLOC_033074 |
| TCONS_00065213 | lncRNA | downstream | 218331 | 40856139 ~ 40863887 (-) | False | XLOC_033074 |
| TCONS_00064291 | lncRNA | upstream | 1165 | 41086608 ~ 41091181 (-) | False | XLOC_033082 |
| TCONS_00065217 | lncRNA | upstream | 1186 | 41086629 ~ 41091448 (-) | True | XLOC_033082 |
| TCONS_00065218 | lncRNA | upstream | 366227 | 41451670 ~ 41452888 (-) | True | XLOC_033085 |
| TCONS_00064308 | lncRNA | upstream | 1289377 | 42374820 ~ 42377284 (-) | True | XLOC_033094 |
| TCONS_00064310 | lncRNA | upstream | 1293420 | 42378863 ~ 42379632 (-) | True | XLOC_033095 |
| TCONS_00064284 | mRNA | downstream | 3009 | 41057943 ~ 41079209 (-) | True | XLOC_033081 |
| TCONS_00064282 | mRNA | downstream | 53520 | 41023580 ~ 41028698 (-) | False | XLOC_033080 |
| TCONS_00064280 | mRNA | downstream | 60338 | 41014791 ~ 41021880 (-) | False | XLOC_033079 |
| TCONS_00064281 | mRNA | downstream | 60647 | 41018565 ~ 41021571 (-) | True | XLOC_033079 |
| TCONS_00064279 | mRNA | downstream | 89535 | 40977968 ~ 40992683 (-) | True | XLOC_033078 |
| TCONS_00064292 | mRNA | upstream | 33467 | 41118910 ~ 41138854 (-) | False | XLOC_033083 |
| TCONS_00064293 | mRNA | upstream | 33483 | 41118926 ~ 41138854 (-) | False | XLOC_033083 |
| TCONS_00064294 | mRNA | upstream | 33484 | 41118927 ~ 41135215 (-) | False | XLOC_033083 |
| TCONS_00064295 | mRNA | upstream | 33484 | 41118927 ~ 41138855 (-) | True | XLOC_033083 |
| TCONS_00064296 | mRNA | upstream | 137761 | 41223204 ~ 41229787 (-) | True | XLOC_033084 |
| TCONS_00064277 | other | downstream | 135743 | 40946357 ~ 40946475 (-) | True | XLOC_033076 |
| TCONS_00064263 | other | downstream | 262452 | 40795898 ~ 40819766 (-) | True | XLOC_033070 |
| TCONS_00064261 | other | downstream | 314547 | 40762757 ~ 40767671 (-) | True | XLOC_033067 |
| TCONS_00064247 | other | downstream | 414755 | 40667347 ~ 40667463 (-) | True | XLOC_033062 |
| TCONS_00064246 | other | downstream | 425930 | 40656204 ~ 40656288 (-) | True | XLOC_033060 |
| TCONS_00064312 | other | upstream | 1324014 | 42409457 ~ 42418108 (-) | False | XLOC_033096 |
| TCONS_00064313 | other | upstream | 1324781 | 42410224 ~ 42415662 (-) | False | XLOC_033096 |
| TCONS_00064314 | other | upstream | 1329923 | 42415366 ~ 42415879 (-) | True | XLOC_033096 |
| TCONS_00064318 | other | upstream | 1867316 | 42952759 ~ 42970918 (-) | True | XLOC_033098 |
| TCONS_00064336 | other | upstream | 2172402 | 43257845 ~ 43260324 (-) | False | XLOC_033105 |
