RNA id: TCONS_00064291


Basic Information

Item Value
RNA id TCONS_00064291
length 522
lncRNA type retained_intron
GC content 0.37
exon number 2
gene id XLOC_033082
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41080003 ~ 41091448 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGAACTTGACAAACCTGCTCTTTCGCACACGCGTCGTCTGTTTTTAGACTGAAGCTTGGGTACATTTAATACAAACGTCTGGGAAGTGGAATTAACATGGCATGCGTCCGTGTGTTTATTCGCCCGAACGGACCTTCTCATATATGAAAAGGCGAGAGAGCCTACGGctgtcacatactgtatacagtacAAGTGTGACATCTCAGAACACCTTCCGGTAATCTTTCAGGTAGTAGAACAGTTGCATAATTCAATCTAAAATGTGACCGCCCATTACTGTTAGCTAATGGTATTTTGCAATAATCTTAAAAGAACATTTACAAAAGCCTGATATATACATCTTGTCACCAACCACATTTCAGACTAGACCAGTAATATACTTCAAACTGACATTTTTCTTGTCCCCCAAAAAACctgtaaatactttttaaatgattttactaCAAATGTATGTTCTTACTGTAAGATGTTTGACCTTGTGAGtattaaaatttacattaaatcCTTGTAATTTGGATTC

Function

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000153666

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064283 lncRNA downstream 57990 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00065216 lncRNA downstream 118267 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00065214 lncRNA downstream 222530 40856139 ~ 40864078 (-) False XLOC_033074
TCONS_00065213 lncRNA downstream 222721 40856139 ~ 40863887 (-) False XLOC_033074
TCONS_00065215 lncRNA downstream 222887 40860296 ~ 40863721 (-) True XLOC_033074
TCONS_00065218 lncRNA upstream 360489 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00064308 lncRNA upstream 1283639 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00064310 lncRNA upstream 1287682 42378863 ~ 42379632 (-) True XLOC_033095
TCONS_00065219 lncRNA upstream 1319043 42410224 ~ 42415879 (-) False XLOC_033096
TCONS_00064316 lncRNA upstream 1851524 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00064290 mRNA downstream 916 41082424 ~ 41085692 (-) False XLOC_033082
TCONS_00064285 mRNA downstream 1151 41080003 ~ 41085457 (-) False XLOC_033082
TCONS_00064288 mRNA downstream 1165 41082218 ~ 41085443 (-) False XLOC_033082
TCONS_00064284 mRNA downstream 7399 41057943 ~ 41079209 (-) True XLOC_033081
TCONS_00064282 mRNA downstream 57910 41023580 ~ 41028698 (-) False XLOC_033080
TCONS_00064292 mRNA upstream 27729 41118910 ~ 41138854 (-) False XLOC_033083
TCONS_00064293 mRNA upstream 27745 41118926 ~ 41138854 (-) False XLOC_033083
TCONS_00064294 mRNA upstream 27746 41118927 ~ 41135215 (-) False XLOC_033083
TCONS_00064295 mRNA upstream 27746 41118927 ~ 41138855 (-) True XLOC_033083
TCONS_00064296 mRNA upstream 132023 41223204 ~ 41229787 (-) True XLOC_033084
TCONS_00064287 other downstream 1161 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064277 other downstream 140133 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064263 other downstream 266842 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 318937 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 419145 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064312 other upstream 1318276 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 1319043 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064314 other upstream 1324185 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064318 other upstream 1861578 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064336 other upstream 2166664 43257845 ~ 43260324 (-) False XLOC_033105

Expression Profile

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