RNA id: TCONS_00064293


Basic Information

Item Value
RNA id TCONS_00064293
length 1551
RNA type mRNA
GC content 0.41
exon number 6
gene id XLOC_033083
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41118910 ~ 41138855 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGAGAGAATGAGAGGGGTGGGCTTCACATTCAGTCAGAGTATTATAACCACCGACCCACGCTGATTTAAGAGTAACTTCACGGCCAAGTTAAAAGCGGCTTGACTTCCTGAACTTTTAACCGGACGCCTTCATCAGAGGTATTTCGCTTGGCACCCGGCGTCTTCTCAGCGTGGGTTTGAACAGCACAAGTGTTCTGCTGCTGAATGTAGGCCAAAGGGCACAAACAAAAGCGCAATAACTGGTGACATGGAAATACAGCATGATCCAGATTTGCAGTTCAAACTGGCTTATTCAGATGCTCAAAGTAATGAAACAGGCTTGAAAACCCAAATAAGGGGCCAGTGGTCCAGCAAAGTGGAGTTTATCTTAGCCGTCGCTGGCCAGATCATTGGGCTGGGAAATGTTTGGAGATTTCCATATCTGTGTTATAAGAATGGAGGAGGAGTGTTTTTTATTCCATATGTGGTCTTTTTGTTTGCCTGTGGCATTCCTCTCTTTCTAATGGAAACTGCATTGGGTCAGTACACCAGCCAGGGTTCTGTCACCTGCTGGAGGAAGATCTGCCCACTGTTTGAAGGCTTGGGTTATGGCAGTCAGGTGGTCGTCTTGTATTCCAGTGCCTACTACATCATCATTTTGGCCTGGGCATTCTTCTATCTGTTCTCTTCTTTTAGTGGGGAACTACCATGGGCAAGCTGCAGGAACTGGTGGAATTCAGAGACTACGTGTCCTTTGCACTCCAGCAAGTGATCTACCTTTGACATCCGAAAGACCAAAAGAAACCCTGTGACCACAAGCAAAAGTACAGCGTGTTCTATGACTGATAAGAAAACAAATCCTTGGGCTGTATTTAGGATAACTTTTGATATCAATATGTTTTCGGAGATTCTCATGAGACCTCAAGAAGCCAACACAAACTGTACATGACTGTTTTTATCATGTTTGATTGTTAGTTTCTCAGTTCCAAGCATCTAAATGTTGATCGCCTTAATCTGGAGATGAGCACAAGCACATCGGTTATAGATAGCTGTATTTGAAGGAAAACTCAGTTGGACGTCATCTTTAAGTGTGATAGTGGCACTGACTTGTTGTATCATAAACTGTCAAGATAACAGTGGAAATGTGGAAACGATTATCATGAGGACCAGCACAATTTTGGATGGACCAATGGTGTGTGAGTGGTAAATGTGTTGTTTTCTGTCACATAGATGGTTTGTAATGGTTTAACCAGAGTGAATCACTTCAAAATGATGCCAATTAGTGTTGACAGTGTTAACAGTATTTCATAATAGTAGGATttccttacatttttaattgtCAGTCATGCAGATTTcatgaaaacaaatcatttacagAAAGTGAATTATGTTGGCCTTATCGTATtacatattttacagtatttgctcTGCGTTTTCTTGAAAAATAGATTTCTATTTTGCTACCTAAATATGCGTAGTTGTACAGTGTTTATATTTTAGTAAATGGTGTAATTTAAAAGGATATCTGTAGGTCACTTACGTTTATGTACATGACTTAGAACggttttaa

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0043005 neuron projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042165 neurotransmitter binding molecular_function
GO:0015293 symporter activity molecular_function
GO:0005328 neurotransmitter molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-629 Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A13 (solute carrier family 6 member 13).

Ensembl:

ensembl_id ENSDART00000151055

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065217 lncRNA downstream 27478 41086629 ~ 41091448 (-) True XLOC_033082
TCONS_00064291 lncRNA downstream 27745 41086608 ~ 41091181 (-) False XLOC_033082
TCONS_00064283 lncRNA downstream 90308 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00065216 lncRNA downstream 150585 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00065215 lncRNA downstream 255205 40860296 ~ 40863721 (-) True XLOC_033074
TCONS_00065218 lncRNA upstream 312816 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00064308 lncRNA upstream 1235966 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00064310 lncRNA upstream 1240009 42378863 ~ 42379632 (-) True XLOC_033095
TCONS_00065219 lncRNA upstream 1271370 42410224 ~ 42415879 (-) False XLOC_033096
TCONS_00064316 lncRNA upstream 1803851 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00064286 mRNA downstream 27688 41080207 ~ 41091238 (-) False XLOC_033082
TCONS_00064289 mRNA downstream 27775 41082326 ~ 41091151 (-) False XLOC_033082
TCONS_00064290 mRNA downstream 33234 41082424 ~ 41085692 (-) False XLOC_033082
TCONS_00064285 mRNA downstream 33469 41080003 ~ 41085457 (-) False XLOC_033082
TCONS_00064288 mRNA downstream 33483 41082218 ~ 41085443 (-) False XLOC_033082
TCONS_00064296 mRNA upstream 84350 41223204 ~ 41229787 (-) True XLOC_033084
TCONS_00064297 mRNA upstream 371281 41510135 ~ 41536323 (-) True XLOC_033086
TCONS_00064298 mRNA upstream 857212 41996066 ~ 42003780 (-) True XLOC_033087
TCONS_00064299 mRNA upstream 892982 42031836 ~ 42036685 (-) True XLOC_033088
TCONS_00064300 mRNA upstream 899504 42038358 ~ 42049350 (-) True XLOC_033089
TCONS_00064287 other downstream 33479 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064277 other downstream 172451 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064263 other downstream 299160 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 351255 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 451463 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064312 other upstream 1270603 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 1271370 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064314 other upstream 1276512 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064318 other upstream 1813905 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064336 other upstream 2118991 43257845 ~ 43260324 (-) False XLOC_033105

Expression Profile

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