RNA id: TCONS_00064296


Basic Information

Item Value
RNA id TCONS_00064296
length 1410
RNA type mRNA
GC content 0.40
exon number 5
gene id XLOC_033084
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41223204 ~ 41229787 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCAGTATCTCTGGGTTTGGCTGGCAGAGGAGCTCAACACTccttcacagacacacacacaggctgatGCTCCATCCGTTTCATCAATGTGCATGGTCATATTTGCTCCGCTTTTTGCTGTTTTAGCATTTGCAACATGTGGCGGATATTCTGGCCAGATAATGGTTAAAGTAGAATGTTTGGACAAAACCCAAAACAACATCAGCATTAGTTTCAACTACCCCTTCAGATTGCAACAGGTTCACTTCACTGCTCCTCTGTGTGAAAAAACCAGGAAAGAGACTCTTTTTCTGGAAGGCGATTATGCTTCGTCCGCGCAGTTCTTTGTCTCTGTGTCAGTCCTGGCTTTTCTCTATTCCCTTTTGGCCACTATTGTTTACTTCTTCTACCAGAACAAATACAGAGAGAAGAACAGAGGTCCAGTAGTTGATTTCTTGGTGACTTTAGCTTTCTCTAGCATGTGGCTAGTGAGCTCAATTGCCTGGGCTAAAACTCTGTCTGGGGTAAAAACGGCCACTGATGTGCACCAAATCATGCTGTTAATGTCTGCATGCAGAGCCCAGGAGAACACATGTGAGGTCCTGCAGGAACCCATCTGGACCAatctcaacatgtctgctGCCTTTGGTTTTTTGAACTTCTTACTTTGGGCTGGTAATATCTGGTTTGCCTATAAAGAGACGGGTCTGCATAAGTCTTTCCAGCGGTATCCCTCCAGAACGCCCTCTGAGAAGCGCGGTAGCTTCAGGCAGTTCAGTCAGACCAGCTTTGATCAGTCCGGAGCCGGTTTTGGTCAGAGGCTCTACAACCAGGGAAGTTTTGACTTGTCCAGCGGAGGCTTCAGTCTCCCACAAACCAGTCTGGGACAGCCGATGCTGTACCGACAGATGGGGAGTCCCACATCCAGAGGCCCTCTCATATTTGTTAATGAGATGTGAGACAGAAATACTCAGTAGTAACACAGGTAATTTGTCattgtgcatttatatttctatCATGTCATATACTGTATTGTGACAAAGATATGTCTTTACCGTAGCTATAATTAAGTCCTGCTGAATTATAAACTGATATATTGTAGTATATAACCTCTTTTTATCTTTAAATCTTTTTATCTTTGCATATAAAGAAATAATTTACCATTTCAGATGTAATATTTTGTGATATTGCTCCAGTATTTGTATGGCGTTTAGCATAGCATACCTATATTCAAACAGtctatattttgtgtttaaatatatcaaaacatatttcaatttttaaatatagacTTTAATTTGAAATGGTGTTTTTGCATTTTCCAAGGAACTTATTGATAAATGTGGTATACTATATGTACTATTATATATGTTACTATTATCTTTGTTTCTGtcactgaataaaaaaagtaaCTGACGTTTAGCCAACAA

Function

GO:

id name namespace
GO:0030672 synaptic vesicle membrane cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017075 syntaxin-1 binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-625 Predicted to be located in membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane. Is expressed in epiphysis; female organism; forebrain; and male organism. Orthologous to human SYNPR (synaptoporin).

Ensembl:

ensembl_id ENSDART00000065013

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065217 lncRNA downstream 131756 41086629 ~ 41091448 (-) True XLOC_033082
TCONS_00064291 lncRNA downstream 132023 41086608 ~ 41091181 (-) False XLOC_033082
TCONS_00064283 lncRNA downstream 194586 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00065216 lncRNA downstream 254863 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00065215 lncRNA downstream 359483 40860296 ~ 40863721 (-) True XLOC_033074
TCONS_00065218 lncRNA upstream 221883 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00064308 lncRNA upstream 1145033 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00064310 lncRNA upstream 1149076 42378863 ~ 42379632 (-) True XLOC_033095
TCONS_00065219 lncRNA upstream 1180437 42410224 ~ 42415879 (-) False XLOC_033096
TCONS_00064316 lncRNA upstream 1712918 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00064295 mRNA downstream 84349 41118927 ~ 41138855 (-) True XLOC_033083
TCONS_00064292 mRNA downstream 84350 41118910 ~ 41138854 (-) False XLOC_033083
TCONS_00064293 mRNA downstream 84350 41118926 ~ 41138854 (-) False XLOC_033083
TCONS_00064294 mRNA downstream 87989 41118927 ~ 41135215 (-) False XLOC_033083
TCONS_00064286 mRNA downstream 131966 41080207 ~ 41091238 (-) False XLOC_033082
TCONS_00064297 mRNA upstream 280348 41510135 ~ 41536323 (-) True XLOC_033086
TCONS_00064298 mRNA upstream 766279 41996066 ~ 42003780 (-) True XLOC_033087
TCONS_00064299 mRNA upstream 802049 42031836 ~ 42036685 (-) True XLOC_033088
TCONS_00064300 mRNA upstream 808571 42038358 ~ 42049350 (-) True XLOC_033089
TCONS_00064301 mRNA upstream 821693 42051480 ~ 42112191 (-) False XLOC_033090
TCONS_00064287 other downstream 137757 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064277 other downstream 276729 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064263 other downstream 403438 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 455533 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 555741 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064312 other upstream 1179670 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 1180437 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064314 other upstream 1185579 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064318 other upstream 1722972 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064336 other upstream 2028058 43257845 ~ 43260324 (-) False XLOC_033105

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_10117381_10122090.mRNA True 1553 mRNA 0.43 5 CI01000340 10116722 ~ 10122090 (-)
tiger barb (Puntius tetrazona) TU69405 True 1677 TUCP 0.40 5 NC_056704.1 20161440 ~ 20166279 (-)