RNA id: TCONS_00064297


Basic Information

Item Value
RNA id TCONS_00064297
length 1811
RNA type mRNA
GC content 0.47
exon number 11
gene id XLOC_033086
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41510135 ~ 41536323 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTCGACTCAATAGAACGATTCGAACACTCGCAGCACATGGTTGCCTTCAAGGACGAAAACATGCAGGTTACATTATTATCAGATATTTTGTAGCAGCTCagaatttagtttctttcttGATCAGTGTACAGTTCGGAGCGATGACTTTCAAGACCACTTGGTTTCTTCGCCGATGTATGCACAGAAAGAGTGGATTGTTAAAACAGAGGTGTGACGTTGTGCGGTTGTTGTGCTGTGGTAGTgcagcagagggcgctcttgcTCCACCGGCAGAGCGCAGCATCACAGCCGAGCGCGCGGTCGGTCTGTGGGCTCAACACTTCAGCCTGCACCGCATCTCGGAACCTCTACTCTCTAGTCAATACATCATATCTCATGTACTTGGCGAAAAAACTCTGGAATGTGTTCAGAAGAAAAGACTGCGAGACACCCTGACTgacaaagaaagagaaactgtGTGGAAATTGTGCTCAAAACGCCTAACAAGGATGCCTGTACAGTATGTGATTGAGGAATGGGACTTCAGAGACTTGACCTTGAAGATGAAGCCTCCTGTGTTCATACCCCGTCCCGAAACAGAGGAGCTGGTTGGTCTAGTTCTAGAGGACTTTGAGTCTATTCGGGGGGATTTTCATGGTCTGGAGGTGGGCTGTGGGTCTGGAGCCATTTCTCTTAGTTTACTACGCAGCCTTCCACAGCTCAGGGTATTTGCTTTGGATCAGAGCCAGGATGCTGTATGTCTAACAATGGAAAATGCAAACAGACTAGGTCTGCAGGACAGACTAGAGGTTCATCATTTAGATGTGGTTAAAGaCGCAGATGTGATCCTGAGCAAATGTAACCCTGTTGACTTTATTGTCAGCAACCCTCCCTACATACTCAGTCAGGACATGGAGGCTTTACAGACAGAGATATTCGGCTTTGAAGACCACGCTGCGCTGGACGGAGGGTCAGACGGCCTCTTTGTGATTCGTCCCATTCTGGCTCTGGCTTCCAAGCTCTTAACAAAACAAGGGCGGGTTTATCTGGAAGTTTCCTCATGTCATCCTCCAGTCATCCAGCAGCTGGTGATGGAGACCATGCCTGAGTTCATTTATCTGGAAAGCCGCTGTGACCTCAGTAACAGACCGAGATTCTGTATTTTACAGAAGAATGAAGAAAATGGCTGAAACCGAGGATTCAGAAATACAGTCAAGACAATTGTTTAACACAGCACAGGAGAACAAGAGATTTCAGCAGTTGCCCATTCAGAATGCCTTTAGCCAAATTGCATGTGGTACAGAGCCAGTCTCCTGCCAGTTTCCCAGCATGCAGCAAGCACAAAAACCTGCCAATCCTACCGAGAAGCTCCTTCCTTAAATCCACCTTCCACAGGTCTCTATTTGTTTTGTGCCACAACCTACTGCTGTTACAGCTTCGACGCTGACTTTCCTTTAAattggtaagtgtgtgtgtgtgttttgttgtggTGAGATTGCATTGATTGTGAGTATGTGCTCAGTGCGCAGTAAGTGTCAGGGTGCAGTAGGCTGAAGGTAATTATTGAGGCCTTTTCTAAGAACTCCCCCTCCCAGCCCTGCACTCGTCTCTCCCTGGAAGTAATGCGCTCATTCTGCGAAACAGCTGGCCCATTGCCTCTCGCAGCACGACGCTagcccacaaacacacacagaaagccTACAAATACTGACTGATAACCTGACATGCTCCATGGCTACGACGAATGCAAGATCAATCTGTGTAAACTGGAATGAAACAAGCATTAAACCCTGATCGAGTCATTTTGTATTTCTATAATACAcgacataa

Function

GO:

id name namespace
GO:0006479 protein methylation biological_process
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008276 protein methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-185 Predicted to enable nucleic acid binding activity and protein methyltransferase activity. Predicted to act upstream of or within protein methylation. Orthologous to human HEMK1 (HemK methyltransferase family member 1).

Ensembl:

ensembl_id ENSDART00000113157

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065218 lncRNA downstream 57247 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00065217 lncRNA downstream 418687 41086629 ~ 41091448 (-) True XLOC_033082
TCONS_00064291 lncRNA downstream 418954 41086608 ~ 41091181 (-) False XLOC_033082
TCONS_00064283 lncRNA downstream 481517 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00065216 lncRNA downstream 541794 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00064308 lncRNA upstream 838497 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00064310 lncRNA upstream 842540 42378863 ~ 42379632 (-) True XLOC_033095
TCONS_00065219 lncRNA upstream 873901 42410224 ~ 42415879 (-) False XLOC_033096
TCONS_00064316 lncRNA upstream 1406382 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00064753 lncRNA upstream 1505627 43041950 ~ 43047774 (-) False XLOC_033101
TCONS_00064296 mRNA downstream 280348 41223204 ~ 41229787 (-) True XLOC_033084
TCONS_00064295 mRNA downstream 371280 41118927 ~ 41138855 (-) True XLOC_033083
TCONS_00064292 mRNA downstream 371281 41118910 ~ 41138854 (-) False XLOC_033083
TCONS_00064293 mRNA downstream 371281 41118926 ~ 41138854 (-) False XLOC_033083
TCONS_00064294 mRNA downstream 374920 41118927 ~ 41135215 (-) False XLOC_033083
TCONS_00064298 mRNA upstream 459743 41996066 ~ 42003780 (-) True XLOC_033087
TCONS_00064299 mRNA upstream 495513 42031836 ~ 42036685 (-) True XLOC_033088
TCONS_00064300 mRNA upstream 502035 42038358 ~ 42049350 (-) True XLOC_033089
TCONS_00064301 mRNA upstream 515157 42051480 ~ 42112191 (-) False XLOC_033090
TCONS_00064302 mRNA upstream 515194 42051517 ~ 42073367 (-) True XLOC_033090
TCONS_00064287 other downstream 424688 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064277 other downstream 563660 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064263 other downstream 690369 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 742464 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 842672 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064312 other upstream 873134 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 873901 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064314 other upstream 879043 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064318 other upstream 1416436 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064336 other upstream 1721522 43257845 ~ 43260324 (-) False XLOC_033105

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_10258762_10264352.mRNA True 2394 mRNA 0.39 10 CI01000340 10258553 ~ 10265625 (-)