RNA id: TCONS_00064300


Basic Information

Item Value
RNA id TCONS_00064300
length 2456
RNA type mRNA
GC content 0.41
exon number 11
gene id XLOC_033089
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42038358 ~ 42049350 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCTGCAGACAGTGTCGAACAGTGAGAGTGAATCTGCAAACTTTCCCTGTACCGCCAGTATCAGAGGACAAAGATGGCACCCAAGAGAAGGGCAGCATCGAGCACCAAAGCTGGAGGGAAGAAAGTCAAGCAGGAGACGCAGCCTGAAGCTCCACCCAAGGACAAATTCACTTCCGCCAAAGAGGCCCTGAAGGCAACAGGATCGCAGGTGAAGGGCACAAGGAACCCAGACAGCGTATGTCATCTGTCAAATGCTGAGGTTCACGAGGATTACGACTGTATGCTTAACCAAACCAACAtaggaaacaacaacaacaaattctaTGTAATCCAGGTCTTAGTGTCTGGAGGGAAGTACTACTGCTGGACAAGATGGGGAAGAGTGGGAGAGTCGGGCCAAAACGCTTTAGCTGGTCCATCTGCCGCTGATGCAGCCATTAAGAGTTTTGAGAAGAAATTCAAAGAGAAGACCAAGAATAATTGGAGCGACCGAGAAAACTTTGTCTCACATTCTGGGAAATACACATTGATAGAAGTGGACGGGGACCAAGATGCAGAAGTGAAGGTGGACTCTGTGGATGGTGGAGCTGTGAAGGTGAAAAGAGAACAAAATGTTTTGCCTTGTACATTGGATGCTGAAACTCAAAGACTCATGCGATTCATCTTCGACAATGACATGTTCAAAGAAGCCATGACCAGCATGGACCTAGATATTAAGAAGATGCCCTTGGGGAAACTCAGCAAGCAGCAGATAGCCAAAGGCTTTGAGGCTTTGGAGGAAATTGAAGCTGCAATAAAGAAAAGTGAACGGAGCAAGTTTGAAGAACTCACCAACAAATTCTTTACCATAATTCCTCATAACTTTGGCCGCAACAGACCCCCTGTCATTTCTGATGATTCTGTTCTTCAGAGCAAGAAGGAGATGCTTTTGGTTCTTGCAGATATTGAGGTTGCCCAGAGTCTTAAAGCTGAATCTGAGAAAGCCAAGGAAGAGATGGAGGACACTGTGCCTCATCCAGTTGACCAAAATTACCAGTCTCTGAAATGCAGTCTGAATCTGGTGGATAAGAAGTCAAAGGAATATAAGATCATTGAGAAGTACTTGAAGGCCACTGGACAAGAAGGACTCACTCTCGTGGATGTATGGGAAGTTGACAGAGAAACAGAGgctgaACGCTTCAGGGAAAATGATGCATTGGAGAACCGGAAGCTGCTTTGGCATGGAACAAATGTGGCAGTGGTTGCAGCCATTCTGAAGAGTGGTCTTCGCATCATGCCTCATTCTGGTGGACGTGTGGGCAGGGGAATCTATTTTGCCTCTGAAAACAGTAAATCTGCTGGCTATGTGCGTCCATCAAACAAAATTGGCATCATGTTTCTAAATGAAGTTGCTTTGGGAAAGGAGTACACCATCACACGGGACGATCCCAGCTTAAGAAAGGCACCCGCTGGCTATGACAGTGTAATTGCACGTGGAAACCAAGAAccagATCCTTCAAAAGATGTCTTCATTGAACTTGATGGTAAAAAGGTGGTGGTTCCTCAGGGAAAAGCCATAAAACAGCAGCAATACGAGGGAAGTCATTTCTACAACAGTGAGTACCTCATCTATAAGGAAAGCCAGTGCCGCATCCGATACCTCTTGGAGTTGAAGTTTAATTATTACTAGAGATGCAAATCAAGAAACTGTATCTACATACAGCACAGCCACttataaaagccacttctgatatgtGGTTTCGCTCGTATAAAGTGCTGAATGTTTGAGGTAATTACTGAGTTGGAAATTCATTGAAGTTCTGTTTTTGAAAGCTACAGTACACAACAACGTTTTTATGTACTGTAAACCTTAGTGTGATCTTACAATATGTTTGCTCATTTTGTCATATCCCTGAGTGAAGTTTAAATgtcttttatcatttattttctgcAATATCTTATTCAAGTTCAAAACAGATTTACTGGTTTCAGTAGTGTCAGAACAACAAGTTATTACATGTGTTTAAACATCTTTAAGCATTTATAAAAACTTGAGTCAGGgagcatatatgtatatatacatatatctatagtAATTTAGGGGGAAATGAAGAcagataaaatattgtaattgttttttgtttttaaagtttaattttgcaCTAATCAATACAGTAATGTGCATGTGACTTGCTGACTCATTGCTGAAAAGCATAGCTTGTGAAGGTAATGTGATGCTCTGGACCCTTATATATTTGCTTGATGTTAAAGGAAAGGTCTTATACATGCACAAATGCAACATACTGTATTGTTTGTTTATAGTTATCTTTTCTTATATACTTATACTTAAAGTTACTTATCTTCatagttatcttttttttttacatcttatgGTGAGTTTTGAAGTTCCAACATAAATGTTAATGTGAGGACTTGGCACTTAAACAATCTGAAGATAATAAATCATTATACTTAT

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0090299 regulation of neural crest formation biological_process
GO:0006471 protein ADP-ribosylation biological_process
GO:0071696 ectodermal placode development biological_process
GO:0070212 protein poly-ADP-ribosylation biological_process
GO:0035861 site of double-strand break cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0016740 transferase activity molecular_function
GO:1990404 protein ADP-ribosylase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7435 Predicted to enable NAD+ ADP-ribosyltransferase activity and protein ADP-ribosylase activity. Acts upstream of or within ectodermal placode development and regulation of neural crest formation. Predicted to be located in nucleus. Predicted to be active in nucleolus and site of double-strand break. Is expressed in axis and notochord. Orthologous to human PARP3 (poly(ADP-ribose) polymerase family member 3).

Ensembl:

ensembl_id ENSDART00000022949

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065218 lncRNA downstream 585470 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00065217 lncRNA downstream 946910 41086629 ~ 41091448 (-) True XLOC_033082
TCONS_00064291 lncRNA downstream 947177 41086608 ~ 41091181 (-) False XLOC_033082
TCONS_00064283 lncRNA downstream 1009740 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00065216 lncRNA downstream 1070017 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00064308 lncRNA upstream 325470 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00064310 lncRNA upstream 329513 42378863 ~ 42379632 (-) True XLOC_033095
TCONS_00065219 lncRNA upstream 360874 42410224 ~ 42415879 (-) False XLOC_033096
TCONS_00064316 lncRNA upstream 893355 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00064753 lncRNA upstream 992600 43041950 ~ 43047774 (-) False XLOC_033101
TCONS_00064299 mRNA downstream 1673 42031836 ~ 42036685 (-) True XLOC_033088
TCONS_00064298 mRNA downstream 34578 41996066 ~ 42003780 (-) True XLOC_033087
TCONS_00064297 mRNA downstream 502035 41510135 ~ 41536323 (-) True XLOC_033086
TCONS_00064296 mRNA downstream 808571 41223204 ~ 41229787 (-) True XLOC_033084
TCONS_00064295 mRNA downstream 899503 41118927 ~ 41138855 (-) True XLOC_033083
TCONS_00064301 mRNA upstream 2130 42051480 ~ 42112191 (-) False XLOC_033090
TCONS_00064302 mRNA upstream 2167 42051517 ~ 42073367 (-) True XLOC_033090
TCONS_00064303 mRNA upstream 96276 42145626 ~ 42290259 (-) True XLOC_033091
TCONS_00064304 mRNA upstream 241958 42291308 ~ 42336995 (-) False XLOC_033092
TCONS_00064305 mRNA upstream 241995 42291345 ~ 42336987 (-) True XLOC_033092
TCONS_00064287 other downstream 952911 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064277 other downstream 1091883 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064263 other downstream 1218592 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 1270687 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 1370895 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064312 other upstream 360107 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 360874 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064314 other upstream 366016 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064318 other upstream 903409 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064336 other upstream 1208495 43257845 ~ 43260324 (-) False XLOC_033105

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_10497000_10501726.mRNA True 2805 mRNA 0.39 10 CI01000340 10496636 ~ 10502577 (-)