RNA id: TCONS_00064301


Basic Information

Item Value
RNA id TCONS_00064301
length 3358
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_033090
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42051480 ~ 42112191 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGGCAATGGTGAATTTGCAGATTATGCATCATCTAATGCTCAATCTGTCTGTTTGATCCACAGATTGTGATCTTTTCTAACAAGCGGGAGATGGCGGAGATCCTCCAGTTTGCTTATGCCTGCTTACTCTCACACTCAACTGTCTGAAGTCTTACTCTAGCACTAGTCTAAGCATTCCTCCTTTCCAATAAGCGAAAGGACCAAAGACTGGCAAACAGGGATTGACCCTGTTAAATGCACCGATCTTTGCGCACCATGGCTCAGAGGTCAGCTCATTTTAGAGGTCACGGGCCCTCCTGGCCGCTTCACCTCACTCTGCTGCTGCTTCTGTTGGCCAGGACACCTCAAGCATTGGCAATTCCAGGGTACAACACTGACACCTCCAAGAAGGAGATCGTAATGGATGGAGATCTAGTGATCGGAGGCCTGTTCCCTGTTCATCATAAAGGGGAAGGAGCTCAGGACTGTGGCCGAATTAATACACAGAGAGGGATTCAGAGACTTGAGGCAATGCTGTTAGCTTTGGACAAGATCAATCAGGATGATCAGATTTTGCCCGGGGTGACGTTAGGTGCCCACATTCTGGACACTTGCTCCAAAGACACATACGCACTCGAGCAGTCACTTGAATTTGTGCGTGCTTCGCTTACGAAAGTGGACGATAGTGAGTACACGTGTCCGGATGGATCCTACGCCATCCACGATGACGTTCCGCTCGCAATATCAGGCGTGATTGGAGGATCCTACAGCGATGTATCCATACAGGTGGCCAATCTCCTACGCCTTTTCCAGATCCCTCAGATCAGTTATGCCTCCACCAGTGCAAAACTGAGTGACAAATCCCGCTATGATTACTTTGCCCGGACTGTACCTCCTGACTTCTACCAAGCCAAAGCCATGGCTGAGATCCTACGCTTCTTCAACTGGACGTACGTCTCCACTGTGGCCTCAGAGGGAGATTACGGCGAGACGGGCATCGACGCCTTTCAGCAAGAAGCTCGGGCCTTACAAATCTGCATTGCAACATCTGCCAAAGTCAGTCGCTCCATGGACCAATACAGTTATGATGGAGTGATCAGATCTCTGTTGCAGAAGTCCAACGCTAAAGTGGTAATCCTGTTCACCAGAAGTGAAGATGCAAGAGAGTTGTTGGTCGCTGCGAAGCGAATGAATGTCTCCTTCATCTGGGTGGCCAGTGATGGATGGGGAGCGCAGGAGGTTGTGGTGAGAGGGAGTGAAAGTGTTGCGGATGGAGCTTTTACTATTGAGCTTGCGTCATATACCATCCCTGAATTCGCAGCGTACTTTACAAACCTCAATCCGTATAACAACACACGTAACCCGTGGTTCAGAGAGTTCTGGGAGAACAAATTCCAGTGCAGTCTGCATGATATTACCTGTGGGAAACATTCTCTTCGGGATGGTAAATTCGAGCAGGAGTCTAAAATCATGTTTGTGGTGAATGCAGTGTATGCTATGGCCAATGCGCTTCACCACATGAGGCAGGCATTGTGCGCCAATAGCACCAAACTTTGCAGTGCCATGAAACCTGTGAACGGGAAAAGGCTGTATAAGGACTACATCCTGAAGACAAAGTTTGATGCTCCATTTCGCCCGGCCGATACTGATAACATCATTCACTTTGATGCATACGGAGACAGTTTGGGCCGCTACAACATCTTCCATTATCACAAAGAGAATGATGAGTACGTCTATAGAAAGGTGGGCTACTGGGCTCAGGATTTGACTCTGAACACAACCTTAATTCCTTGGGAGAGCCAAGCGGTGCCCACATCCCAGTGCAGCGACCCATGTAGGAAAAACGAAATTAAAAGCATGCAGCCCGGAGATGTTTGCTGCTGGATTTGCATTCCCTGTCAGCCCTACCAATACCTCCTGGATGAATTCACATGTGCGGATTGTAGCTTCGGACAGTGGCCTCTAGACAATCTCACAGGCTGTTATGACTTACCTGAGGAGTACATTCATTGGGAGGATGCCTGGGCAATTGGACCTGTCTCTATTGCTTGCCTCGGCATGCTTTGCACGCTCTTCGTCATTGGCCTCTTCCTGAAAAACAACGAGACTCCGGTGGTGAAGGCTAGTGGACGGGAACTTTCCTATATTCTTCTCCTAGGCGTCCTTCTTTGCTATTTCATGACTTTCATCTACATCAGCAAACCTTCAGCCGTTGTGTGCACGTTACGACGGCTCGGTCTGGGCACGTCCTTCGCCGTTTGCTACTCTGCATTACTCACCAAGACCAATCGCATTGCTCGGATTTTCAACGGTGTTAAAGATGGAGCTCAAAGGCCGAGGTTCATCAGTCCAGCCTCACAGGTGGCCATCTGCGCTGCTCTTATCTCCTGTCAGCTTCTTGTGGTAGTGGTCTGGCTCCTGGTCGAGGCTCCGGGGGTGAGAAAGGAGGTCAGTCCTGAAAGAAGAGACGTGGTGACATTGAAGTGCAACAGCAAGGACTCGAGCATGCTGATGTCCTTAACCTACAACTGTGTCCTCATCATCCTCTGTACCTTTTATGCCTTTAAGACTCGAAAGTGCCCAGAGAACTTCAACGAAGCCAAGTTCATCGGCTTCACCATGTACACCACATGTATAATCTGGCTGGCTTTCCAGCCCATCTTCTATGTTACTGCCAGTGACTATAGGGTACAGACCACAACCATGTGCATCTCTGTGAGTCTGAGCGGTTCGGTGGTTCTGGGCTGCCTCTTCGCTCCCAAAATCCACATCATCCTCTTTCAGCCGCAAAAGAACGTCACCACACTCAGAGTGGCCACCACGCGCTTTAGTGTGACCACCGGCCCCGGCTCCAGCTTCTCTCAAGCCTCGGCCTCCAACATTGTGCCTACAGTATGTAATGGCAGAGAGGTAGTGGACTCAACAACATCTTCACTCTGAGAAACAGGATTCCTGTTTGTTTGCCAAATGCGATTTACTGATAAATCCTATCTTCACTAGTCATGAAATCAAGTGTTTGCTAATGTTGAGAAGGCTATTCTGGATAAAGAATAAAGCCTGTTATGTTGTTCTCAACGTGCTGTGAGTACAATATCCCATTTGTTTCTCTTTCTCTTACTCTTTCTCTATCTGACTAGTTAGATCATATCAGTGGGATGCCAGTTTAAACTCTGTATACCCATTCTTTTTATGGAAACCATAATAAAGTATTGTTTGAGATATGGAGTTAAAATATAGTAAATCTGTTTAAAGTATTATATACGAGATGTTTTTAATGTAGATTTCTGGTGATTCTGGTTTGTGCTTTCTtgtaatttatgtaaataaaatgtgttttttatgaaTTCAAGCTTTGTGGTtgatttactgtctttatta

Function

GO:

id name namespace
GO:0051966 regulation of synaptic transmission, glutamatergic biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007216 G protein-coupled glutamate receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001641 group II metabotropic glutamate receptor activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8097 Predicted to enable group II metabotropic glutamate receptor activity. Predicted to be involved in G protein-coupled glutamate receptor signaling pathway and regulation of glutamatergic synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; retinal neural layer; and trigeminal ganglion. Orthologous to human GRM2 (glutamate metabotropic receptor 2).

Ensembl:

ensembl_id ENSDART00000085472

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065218 lncRNA downstream 598592 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00065217 lncRNA downstream 960032 41086629 ~ 41091448 (-) True XLOC_033082
TCONS_00064291 lncRNA downstream 960299 41086608 ~ 41091181 (-) False XLOC_033082
TCONS_00064283 lncRNA downstream 1022862 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00065216 lncRNA downstream 1083139 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00064308 lncRNA upstream 262629 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00064310 lncRNA upstream 266672 42378863 ~ 42379632 (-) True XLOC_033095
TCONS_00065219 lncRNA upstream 298033 42410224 ~ 42415879 (-) False XLOC_033096
TCONS_00064316 lncRNA upstream 830514 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00064753 lncRNA upstream 929759 43041950 ~ 43047774 (-) False XLOC_033101
TCONS_00064300 mRNA downstream 2130 42038358 ~ 42049350 (-) True XLOC_033089
TCONS_00064299 mRNA downstream 14795 42031836 ~ 42036685 (-) True XLOC_033088
TCONS_00064298 mRNA downstream 47700 41996066 ~ 42003780 (-) True XLOC_033087
TCONS_00064297 mRNA downstream 515157 41510135 ~ 41536323 (-) True XLOC_033086
TCONS_00064296 mRNA downstream 821693 41223204 ~ 41229787 (-) True XLOC_033084
TCONS_00064303 mRNA upstream 33435 42145626 ~ 42290259 (-) True XLOC_033091
TCONS_00064304 mRNA upstream 179117 42291308 ~ 42336995 (-) False XLOC_033092
TCONS_00064305 mRNA upstream 179154 42291345 ~ 42336987 (-) True XLOC_033092
TCONS_00064306 mRNA upstream 232814 42345005 ~ 42369186 (-) True XLOC_033093
TCONS_00064307 mRNA upstream 257808 42369999 ~ 42377307 (-) False XLOC_033094
TCONS_00064287 other downstream 966033 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064277 other downstream 1105005 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064263 other downstream 1231714 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 1283809 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 1384017 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064312 other upstream 297266 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 298033 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064314 other upstream 303175 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064318 other upstream 840568 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064336 other upstream 1145654 43257845 ~ 43260324 (-) False XLOC_033105

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00017101 True 2511 mRNA 0.42 15 CM030122.1 44892111 ~ 44901396 (-)