RNA id: TCONS_00064303


Basic Information

Item Value
RNA id TCONS_00064303
length 1928
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_033091
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42145626 ~ 42290259 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGGCTCGTTCACGCAATCCCTCTGAGTCACAGTCACATGTTGCAACCAGGAAGCAATGCGCTCAATGTTTTGTGCAAAGGATAAACAAAAATTCAGCTGTGTCAATACATAACTAAACTTACCTAACAGTAAAGCCTCAACACTGTAAATGTAACATCTGCCGAGCGACACGCGAGCAAACAAGCCAATTCGCATGCTGAAGGActgattttgtgtttgttttccctGTAGCTGAGGATTATTTATACACGTTGACCGTTTCTGAGCGTGATTTTGTGAAGCCGGGCAAACAAAAATGTCGGACTTTATCATTTTACTGCTAATTCTGTTTTTGATCATCTGTCTGATCGTGACTCTGGTGGGCTTCGTTTTTTACACCGGTCTTTTCTCGGAAGTCGTGATTCGGACTGGATCTCCTCCGGTGAAAAACATCACGATTGCATACAAGTTCTGGAAGAGCTCGTACAAGGCCAGCGGAGCCGCTTTCACGGAGAGCTGCAGCATCGGACCGAAGCTCTCGTCTGTCGGGGTGTTTTACGATGACCCCAATCAGACTCCAGCAGATCAGTGTCGGTATGTTGTAGGCAGTATACTGTGTGAAAATGAAGAGAAACCCGACGAAGAACTCCAGCGTCTATATGAGAAGTTTGGCTACAAGGTGGTGTCCTTCCCAGAGGTCACATGTGCCGTAACGTCCACGTTTCCAAACAGATGCACTCTGTCCCCTGTCTGCGGTGCTTACAGAGTCTATCCTGAACTACAACAGTATATAAAGGAGAGGAGTCTAAATGCGTGCCCATTCCTGGAGATATGCAGAGGAGGTCTGATCCATTACATGTGTCCTCTGGAGAAGCAGGAGGAATTCTGTGTGCCTGAACTTCTGGAGAAGAAAGCATCTGATGACACAGAGGAAACAGTGGAGTGTGAAGAAGCTGATGTCACAGAGATGGTGTCAgGCGAGCCAGAGCAGAAGTCCACCTCAGAGACCCCGGAAGTAGTTGAAGAGAGCCGAGATGCTGTGGAGGCCTCGGCCCCGCTGCTGGAGAGCCCTCAGTCAGCTCTGCCTGAAGAAGAGGCTCGCAGTGAGGATGGAGAACAGGTGGAGAAAGCATCCAGTGATTCTGTAGGCAGCGGCTCCTCCTTTGAAGAACTAGACCTGGAAGTTGAAGAGGAGAAGCAAAGCGAAGCAGACGAAGAAGACCATAATGGACAGCAGAAGCCTGTGGTGATGGGAGAAACAATGGGCAACAGGGAAGAGTGAGGGATGAAGTGGATTAGAGAGAATGTGGATGAAtgatgagtgcatgtgtgagaaagagagagaaaggttGTCTTTGAAATCGTCAAAGGCTCCCCCCCTTCATTAATCTTTGGAATTAACATCTCTAAATATCCTAAAAGTTACTTCTTTGTTATCAGCAAACAAGCAATTATCCCCTTTAGAAGCTTCTATTAAAGACTTAATGAAATGCACATTATATTTTTCGGCTTTGTATTTATTTCCGAGGAAACAAATTGTTTATGTTGCTTTAGCGTTTGTTTTTCCACGGTGATCTGCATTCAGGCGAGTAAATCAGGTGCAGATTGAAGACGAGGATACACTGTTAATGCAACTAAATGAAGCTTAATCAGAGATTTGATTTCATTAACATGTCCTACAGATGATGTGTTCACTAGTGTTTGCTTTAAAACATGATTAGCTCATTCCAAATGCTGTCTTTCGCTGTAGACTAGAAGTGGGAGAAgagtgagattttttttaaaaagtgcatgatGATATTAGTGGTTGGAGTGTGCTTAATATGAGCTGCTTATACTATTTTGtgcatttaattaattagtaTTGTTTTCTACACTTCTGTACTTTGAGTATGGGTCACAAATGAAAggtttcaagcatcaaaacaataaaagtgtaacAGCTTTA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1885 Predicted to be involved in protein-DNA covalent cross-linking repair and reticulophagy. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including autophagosome membrane; endoplasmic reticulum membrane; and replication fork. Orthologous to human TEX264 (testis expressed 264, ER-phagy receptor).

Ensembl:

ensembl_id ENSDART00000064969

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065218 lncRNA downstream 692738 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00065217 lncRNA downstream 1054178 41086629 ~ 41091448 (-) True XLOC_033082
TCONS_00064291 lncRNA downstream 1054445 41086608 ~ 41091181 (-) False XLOC_033082
TCONS_00064283 lncRNA downstream 1117008 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00065216 lncRNA downstream 1177285 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00064308 lncRNA upstream 84561 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00064310 lncRNA upstream 88604 42378863 ~ 42379632 (-) True XLOC_033095
TCONS_00065219 lncRNA upstream 119965 42410224 ~ 42415879 (-) False XLOC_033096
TCONS_00064316 lncRNA upstream 652446 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00064753 lncRNA upstream 751691 43041950 ~ 43047774 (-) False XLOC_033101
TCONS_00064301 mRNA downstream 33435 42051480 ~ 42112191 (-) False XLOC_033090
TCONS_00064302 mRNA downstream 72259 42051517 ~ 42073367 (-) True XLOC_033090
TCONS_00064300 mRNA downstream 96276 42038358 ~ 42049350 (-) True XLOC_033089
TCONS_00064299 mRNA downstream 108941 42031836 ~ 42036685 (-) True XLOC_033088
TCONS_00064298 mRNA downstream 141846 41996066 ~ 42003780 (-) True XLOC_033087
TCONS_00064304 mRNA upstream 1049 42291308 ~ 42336995 (-) False XLOC_033092
TCONS_00064305 mRNA upstream 1086 42291345 ~ 42336987 (-) True XLOC_033092
TCONS_00064306 mRNA upstream 54746 42345005 ~ 42369186 (-) True XLOC_033093
TCONS_00064307 mRNA upstream 79740 42369999 ~ 42377307 (-) False XLOC_033094
TCONS_00064309 mRNA upstream 87652 42377911 ~ 42388608 (-) False XLOC_033095
TCONS_00064287 other downstream 1060179 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064277 other downstream 1199151 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064263 other downstream 1325860 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 1377955 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 1478163 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064312 other upstream 119198 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 119965 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064314 other upstream 125107 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064318 other upstream 662500 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064336 other upstream 967586 43257845 ~ 43260324 (-) False XLOC_033105

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_10557213_10612562.mRNA True 717 mRNA 0.50 3 CI01000340 10557213 ~ 10612562 (-)