RNA id: TCONS_00064305


Basic Information

Item Value
RNA id TCONS_00064305
length 4871
RNA type mRNA
GC content 0.48
exon number 44
gene id XLOC_033092
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42291308 ~ 42336995 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAAGCTCTGCGACATCCTGATCCTTCAGCCTTGTCACGAAAACACATTTTTAGCTTCAGCCTTAATTTATCACCATTTACTAACACAGTATTTACACGACAAACGTTAAAGGTAACTCAGTGTAGCATCTGTTCATTAGCATTTTCATCTGATCTAACTGAAATATGATGCGTAAGAAGAAGCGGTCATCCGTAACAGTGGATGAAGATCCCACTCTTGACGTGTCTAAAGCAAAAAAGAGCAAGAGCAGCGGGCGATCCACAAAGTCTTCAGTTCAGGACTCCTGCCAGGACTCAGTTTTTGTTCAATTTCTGAAGGAATCAGGAGTCACTCTGACACCTGGCAGTACAGCTAATGAAATAGctgTAGACCAAGTTATTTTCCAGAAGCGACTCCAGCAGCGTTTACGAAAAAGTCCCAGATTCCCCAATATAATTCAGGAGTTTATTTCTGCGCTGGAAACATACATTGAAGACCCAGAGAGATTCAGAAACTGCCTACTGCCTTGTGTGCCGGCACCCACTTCACAGCAAGATACTAATTCCAGTTCTTATCAGGAGAGTCTGGTACGCTTGTTGCTTGGGATAGAAATGCTACAGACTCTGGTCATAAACACTTTATTCGAAAAGCTTCCAGAATTCATGTTTGAAGGAGCGAGTGAGGATGGCCTCAATGTTCCACGTCTCATAGTAAACCAGTTAAAGTGGCTGGACCGAATCGTAGATGGCAAGGATCTGAGCAGTAAGCTGATGCAGATGGTGTCTGTGGCTCCAGTGGAGATTCAGCGGGACATTATTACGAGCCTTCCAGAAATCCTGGAGGATTCACAGCATGGAGACATGGCCAAAGAGCTGAATGGTTTACTTCAGCAGAACACTCAACTCGCTGTGCCTATTTTGGATGCTTTATCCAGCCTGAATCTGAGTTCCACCTTACTGTCTGAGGTGCGTGAGGCAGTAATGGGAACTCTCTCTGCTGTGCAGTTGGAGGATCTTCCAGTTGTGGTGAAGTTTGTCTTGCACTCCATCTCTGCATCTGATGCTAATGAGGTGGTGTGTGATCTGCGGAAAAAGCTGGAGCTGGAGCAGTGTGTCTTACCAGCGGTGCTACAGGCCTCTCAGAGTCGAATGAAAAACAAAACCGTGTCAAGGTCCTCCAGTGTCCCATCATGCAGCAGTGGTCAAGATAGTGTGGCTTTGATTCTAGACGTCATAAAGTCAGCAATCCGCTTTCAGAAGACAATCTCAGAAGCGTGGCTAAAGgcCATAGAGAATATTGACGAATCAGAGGATCATAAGgTGGTTGATCTGTTGGTGCTGTTCATCCTTCACTCCACCAATGCAAACCACAGTCGCCGTGGGGCGGAGCGAGTGCTCAAGGTCAAAGTTCGCAAGGGTCTGATTCAGGAAAGCCTCCTGCAGAAGACTTTTAAGGGCCATGCTCAGGTAATGCGGGGTTATTTCCCATCTATCCTGGCTCTGGCTCAGGGACTCTTGCGTTCTCCAGACTGCTGTGTGGTGCCTTTCGGGGGTCACATGTACAAACAGGCCTTCACTGCCTTTGACTCCTACTGTCAGCAGGAGGTTGTGGGCTCTCTGGTCACACACGCATGCAGTGGTGTGAGCGGTGAAGTGGATGTGGCTCTGGAGCTGCTGTGTGAGCTTGTGTCTCAGAAACCAGCAGAGATGAGCCAGTTCACTGTGTTTGTGAAGGGTATTCTGGATTACATGGACAACCTGACCTCACAGCAGATCAGACGTCTATTCCATCTGCTCAGTCGCCTGGCATTCGGACAGGAGCAGCATGGAGGACACATCCAGGATGACATGCACATCGTCATCCGCAAGCAGCTATCAAGCACTGTGCCCAAGTACAAGCGCATTGGTATAATTGGGGCAGTTATGATGGTGGGGAGTATGGGGGCCTGCAGAAATAAACATGATGGCTCTCAGGGTGGCACGTTGCCTAAAGAGACAAACCGACAGGTGATGGCTCTGTTGGAGCTGGTGCGCTCGTGCAGTGAGAGTTCACCTGAAGCTGCTGCTCTCTGTTATGATGAACTGGCCAACCTGCTGCAGACCTGCAAACTGGACCCTctagtgcagGCATGGATTGGGAAGAGTGTGTTGGAGGATTTTCAGGATGACTTTGTTGTAGACCTTGGACCCGATATATCAGGGGCGTTCATGTTTCCCACCTCTGTGCTATATAATTTGGATGAAGAAGAGAGTGAAGGGGGAATCGCTGTCAATCTACTTCCGCTTATGGCTCTAGACCAGCAGCACAAAACAGACACATCGCAACCAGCTGGAGTCAAGAGAGAGAGGCGTGTGTCTCCTCTGTGTCTGTCTCCATTTTTTCGTCTGCTGAGGCTGTGTGAAGAAGTGCAACACGAGGGCGATCTGGAGGAGATTGATGCTCTGCTGGGCTGTCCATTGATCTTGACCGATATGGAGGTGGTGGAGAAGGTGGACAGCTTGTCTAAATCTGAGAGGGAGTTTCTCTGTTCTCTGCTCTTTCACACCATCAACTGGTTCAGAGAGGTGGTGAATGCATTTTGCAGGCAGAATGATCCTGAGATGAAAATGAAGGTTGTAACTCGTATTCAGAACATCACCTACCTTCAGAGTTTACTCCAGACGTGTTTAGCAGCTACACCAGGCTACATTCCTCCTCAGGCTAACTTTGATGGAGAGAGTGCTGATGTGATGATACCATCTTCTTCAGTCgttcaacaaaagaaaggaaagaaagAGTCATCTGGAAGGAAGAGGAAGGCCTCAGCGAGTAAAAACTCCTCTGGTGACAAGTCACAGCTAGAGGGAGCAGCAGATGCAGAAGAGTCCCAACCGgaTCCTCCAGAGAAAGAGAGTGAGAAGGAGAAGGAAAAGGATGGTAAATCAGGGGTCAGTCTGTCTTCCTACTGGCCGTTCTTCAGAGAATTGGATGTTGAAGCTCTGAGTGTGCTGCAGTGTGGCCTTCTGTCTCGGACACTACTGGACACTGAGCTGCACAGTAAGTTGAGGGAGGAAGTGCAGTTGGGCCCTGCTGAGTTGCTTTTCTTGCTGGAGGACATGTGGCGTAAACTGGACTTCAGTTTAACTTCCGCTCCAGCCAAAAAGGCTCCATTTCTCAAAGGTAAAATGGACAAAGCGGTGGGCTTTGCACATTTGCAACAGAAGAATGCCAAAGAAATCGCCACCTGCTGCAGTGATCTGCTGCCCACACTCTGCACACACCTGGAGAACTGCCACAATCATTTCCAGACTCTTCTGACTGAGAATCAGGGTGTTGTTGACGCTCCCAATGTGGATGTGAAGGAAAATCAACTCATGTGTTCAGCCTATCAGCTCCTCCTGCAAGTGCTTCACACCATGTTCAGCTGGTCTGGTTTTTCCATTCCGGAGCATCGTGGTCTGCTGAAAAGCGCTCTGGGAATCCTGGCCGGACGGCTGAAGGAGGATCAGGCAGATCTGACCCTGGATCAGCTCAGCAGGCATGCTTTTGAGTACCTGCAGAACTTCCGAAGCACTGTGCCCAGTCTGAACACAGCCCTGTGCTTGACACAGCTGCTCATTGTGTTGTCTCAGTATGGGGGATCAAACCACAGGACCTACAGAGAACAGATCACATCCCTGACAAAACATTTCCTCTGTCAGGAATGGGTTACAGCGAGtggagaaaaagagagaggaaaCAAATACAACGAGACTCTTCAAACTCTCCTCAGTATTTATCTGGAGCACACAGATGATGTTCTGAAGGCGGTGGAGGAAATAGCAGGAGAAGGGGTTCCGGAGCTCCTAAACGCGGCTAAAGATGCTAACTCTCGCAGCTGGCCGACACTCAACAGGCAGACATTCCTGGTGTACTACAAATGCATGATGTCAGAGCTAGAGAAAGCTGTGCGCAAGATTCCTCCCAGCAAACAAATGGATAATCAAGAGATGCAGAGTGAGAAGCTCTTAACCTGGAACCTGGCTGTGCGGGACTTTCACATCCTCATAAACCTGGTCAAGATGTTCGACAGCAGACCTGTACTCACTGTGTGTTTAAAGTACGGTCGTCTTTTTCTGGAGTCCTTCCTCAAGCTTGGAATGCCTCTGCTTGACTACAGCTTTAAAAAACACAAGGAGGACGTCCAGGGTCTACTGAAGACCTTTCAGCTCAGCACTAGACAACTCCATCACATGTGTGGCCACTCAAAGATCAGGCAAGACACAGGGCTGACCAATCACGTGCCAGCATTGAAGAAAAGTCTGGAGCAGTTTGTGTACCGTGTTAAAGCCATGCTCACTCTCAACCACTGCCAGGAGGCTTTCTGGCTGGGGAACCTGAAGAACAGAGATTTAAAGggTGAAGAGATTCTCTCTCAGAGGTCACAGGcagctgatgaagaggaggaagagtCCTCTCAGCTACAGAGCGAAGCAGAGGAGAGTGACTCTGATGAGAGAAATGATGGACAGGAAGAAGTGGAGGAATCAGATGAATCGGACTGAAATACACTACCGTTGATTTACTAGTTCAGGGGTGGacagccctgttcctggagagccaccttcctgcagatttcagttgcaacccatatcaaacacacctgcctgtaattatcacgtggtgttcaggtcctaattaattgtttcaggtgtgtttgttatggggagcaactgaaatctgcaggaaggtggctatCCAGGAACAGGGCTGTCCACCCCTGTACTAGTGCATCCAATTatattttcttttcctttctaaTTTTAAATGGAGAAAAAGGCTGATGTGTATTAACCATAATCAAGTGGTTTTCTTGAGAAACTATTTGTGTTTTCACATTTTATGGTATTTGTTTGTTGCCGTTTGCtgtca

Function

GO:

id name namespace
GO:0036297 interstrand cross-link repair biological_process
GO:1990918 double-strand break repair involved in meiotic recombination biological_process
GO:0031573 intra-S DNA damage checkpoint biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0007129 homologous chromosome pairing at meiosis biological_process
GO:0006281 DNA repair biological_process
GO:0000793 condensed chromosome cellular_component
GO:0005634 nucleus cellular_component
GO:0070182 DNA polymerase binding molecular_function

KEGG:

id description
ko03460 Fanconi anemia pathway
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040116-5 Predicted to enable DNA polymerase binding activity. Acts upstream of or within negative regulation of apoptotic process. Predicted to be active in condensed chromosome and nucleus. Is expressed in brain; eye; immature eye; and lens. Human ortholog(s) of this gene implicated in Fanconi anemia; Fanconi anemia complementation group D2; and breast cancer. Orthologous to human FANCD2 (FA complementation group D2).

Ensembl:

ensembl_id ENSDART00000128777

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065218 lncRNA downstream 838457 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00065217 lncRNA downstream 1199897 41086629 ~ 41091448 (-) True XLOC_033082
TCONS_00064291 lncRNA downstream 1200164 41086608 ~ 41091181 (-) False XLOC_033082
TCONS_00064283 lncRNA downstream 1262727 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00065216 lncRNA downstream 1323004 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00064308 lncRNA upstream 37833 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00064310 lncRNA upstream 41876 42378863 ~ 42379632 (-) True XLOC_033095
TCONS_00065219 lncRNA upstream 73237 42410224 ~ 42415879 (-) False XLOC_033096
TCONS_00064316 lncRNA upstream 605718 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00064753 lncRNA upstream 704963 43041950 ~ 43047774 (-) False XLOC_033101
TCONS_00064303 mRNA downstream 1086 42145626 ~ 42290259 (-) True XLOC_033091
TCONS_00064301 mRNA downstream 179154 42051480 ~ 42112191 (-) False XLOC_033090
TCONS_00064302 mRNA downstream 217978 42051517 ~ 42073367 (-) True XLOC_033090
TCONS_00064300 mRNA downstream 241995 42038358 ~ 42049350 (-) True XLOC_033089
TCONS_00064299 mRNA downstream 254660 42031836 ~ 42036685 (-) True XLOC_033088
TCONS_00064306 mRNA upstream 8018 42345005 ~ 42369186 (-) True XLOC_033093
TCONS_00064307 mRNA upstream 33012 42369999 ~ 42377307 (-) False XLOC_033094
TCONS_00064309 mRNA upstream 40924 42377911 ~ 42388608 (-) False XLOC_033095
TCONS_00064311 mRNA upstream 72095 42409082 ~ 42418225 (-) False XLOC_033096
TCONS_00064315 mRNA upstream 595770 42932757 ~ 42949184 (-) False XLOC_033097
TCONS_00064287 other downstream 1205898 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064277 other downstream 1344870 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064263 other downstream 1471579 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 1523674 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 1623882 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064312 other upstream 72470 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 73237 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064314 other upstream 78379 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064318 other upstream 615772 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064336 other upstream 920858 43257845 ~ 43260324 (-) False XLOC_033105

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_10626938_10643520.mRNA True 4995 mRNA 0.47 41 CI01000340 10626821 ~ 10644213 (-)
bowfin (Amia calva) AMCG00017090 True 5340 mRNA 0.51 43 CM030122.1 44692983 ~ 44714100 (+)