RNA id: TCONS_00064311


Basic Information

Item Value
RNA id TCONS_00064311
length 2543
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_033096
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42409082 ~ 42418225 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGCTGACATTTTCTCAGTTCGGCGAGAGATTACGGTGTCAGTAGAAGAGCCTGTGCGAAAGAACCAGAAGCTCAGGCATTTAAACGGCTCATTCTCGAATTAATCCCTGACATTTCGCCCTTAAAATAAACCTAGAGCACTTCAAGATACGAATTTTGTAATTCGTGTCATAAAAAAAGACCTGAATCGAAACAAAGagctgttatttttttctgtcgTGTCGTGGTCTTCCTTCTTCCTCTTTCTTTTGTTTATGTCCTGCAGTGTTCTAACGCACGGCGGAGGTAACGCGAGCAAACGATAGCTTTAAACGGGATAAGATAATAAGACCGAAGGAAATATAGAGAGGCCAGCTCGTCCTTCTCATCCGTTTACGCATCTGTGGTGTCCAACTGGACCAGGAGTGAGAGTCTAATGCCCCCGGAGGATGAGCCCAGCCATCGAAGGGATGCAGACAGAGCCGCAGGGGTTTTTGGGCAAAGGGGTGCTCCTTGAGCCCTTTGTGCACCAGGTGGGGGGACACTCGTGTGTGCTCCGCTTCGGGGAGCAGACGATATGCAAGCCCCTCATCCCCCGGGAGCACCAGTTTTATAAGAGCCTCCCCGCGGCTATGCGGAAGTTCACCCCGCAATACAGAGGTGTGGTGTCAGTGAGTTTCGAGGAGGATGAAGAAGGGAATCTGTGTCTTATAGCATACCCTCTGCACAATGAGCTTGGGGACTTGGAGAACGTGGACCCCTCGGCTGATCTGGAACCCAATAACAAAATAACATGGGTCTCCAAGATGCTGCTGGACAATGACAGCTACAGCAAAGAGAGGTCCAGACATGCTCGAAAGGATAAGGACAAGAGTGTGAAACGCGAGGAGGAGCTGGAATGGCTCAAGCAGGCCGAGGTTTTCTACTACAGCCTGGAGAGGAGCAATGCTGCCGGCCCTCAGCTAAAGCACAACCCCTGGAGCCTTAAGTGCCACCAACAGCACCTGCAGAGGATGAAGGAGAACGCAAAGCACCGCAATCAATACAaattcatcctgctggaAAACCTGACATGGAGCTACGCAGTTCCTTGTGTGCTTGATCTGAAGATGGGCACGAGGCAGCATGGCGATGACGCCTCTGAAGAGAAGAAGGCCATGCAGATCCGCAAGTGTCAGCAGAGCACATCTGCCAGCATTGGAGTCCGCCTCTGTGGCATGCAGGTCTATCATCCTGCCACAGGTCAGCTAATGTTCATGAACAAGTACCACGGCCGTAAGCTGACCCTGTCTGGCTTCAAAGAGGCCATCTTTCAGTTTTTCCACGACGGGAGACGCCTACGACGTGAACTCTTATCTCCAGTTCTGCGAAGGCTGCGAGACATGCAGGCTGCGCTGGAGGCCTGCGAAAGCTACCGTTTTTACTCTAGCTCACTCTTGATAATCTACGACGGAGACCCGCCACGAACACGCCATTCTGCTGAGGATGGGCTTtcggaagaggaggaggaagaagatgatgacgatgatgaagaggaagaggaggaggaggaagaagagggaGCTGCATTTGGTTTTCCTCATGGTGCAGGTGCAGCCAGTAGCAGCAGTGGCGCTTGCGGTGGTGGAAGCAGCACCAGTAGCTCTTCGGTGGTGCGACGGATGGCCAGGTCAGACAGCGGGCCGGCCGTAGACGTACGCATGATTGACTTTGCCCACACCACATGTAGGCACTACGGGGAGGACAGTGTAGTCCACGAGGGCCAGGATAGCGGTTACATCTTCGGACTGGAAAACCTCATCACCATAATTTCCCAACTTGAGGACCACAGCACAGACTAAACCACCGCTTCGTTCAAACCAGCATGGCATTCAAATGGGGAAATGCTTTGTTCTCTTTCTCTTCCTTGTTTATTCAATCCATTATGACGTCCGGCTCAGTAAAATCTCAGAGCTCCACCTGTTCAGTTGTGTTTGGTGTCTGTTTTTGTGTGCGTAGCGGATTAAAAAAGGGTCGAGAGACTAACATTGAGATCGACAACTTCCTCAGTGTTTAATAGCTTCACTCACTTCCCTTATGTACTGTTACAACATTGACGCCATTGCCCTTTTTGTTCTATTTATTGAAGGTTAATGGTTATTTACTGATTACAAAAAGGACCTGATTTTGTTCCAGTGCTCACTCTGTGAGAAGGTTCCGGAACTTATTAGCTTCCGAGCGCTCCTTGTTGGATGAAGGAACGGTAGGTTGTGAAATGGAAGACTGTTAAGTGTTACTCTACAGCACTGTCCCCTTGCACCTTTACCCATCGTGAAGAGACAACTATATTCAGATTGTTAGTTGACATAAAGAGACTATagtaaagctttatttatttgtcatatttcctaaataaactaaaaagaaaaaacattgaaAAGGCGAATGGAGATTCAAAACTACATTCCATGTTATTAATGTTACAATAAtgatattaatgaatattattatttgacaTGTTCAGATACCTCTATCTGTTGTACACGGTATGTTGGAGgaataataaaacatgtttgtgtTAAAA

Function

GO:

id name namespace
GO:0007227 signal transduction downstream of smoothened biological_process
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0032958 inositol phosphate biosynthetic process biological_process
GO:0045880 positive regulation of smoothened signaling pathway biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000828 inositol hexakisphosphate kinase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-760 Predicted to enable inositol hexakisphosphate kinase activity. Acts upstream of or within positive regulation of smoothened signaling pathway and signal transduction downstream of smoothened. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including axis; immature eye; nervous system; pronephric duct; and segmental plate. Orthologous to human IP6K2 (inositol hexakisphosphate kinase 2).

Ensembl:

ensembl_id ENSDART00000002501

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064310 lncRNA downstream 29450 42378863 ~ 42379632 (-) True XLOC_033095
TCONS_00064308 lncRNA downstream 31798 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00065218 lncRNA downstream 956194 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00065217 lncRNA downstream 1317634 41086629 ~ 41091448 (-) True XLOC_033082
TCONS_00064291 lncRNA downstream 1317901 41086608 ~ 41091181 (-) False XLOC_033082
TCONS_00064316 lncRNA upstream 524480 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00064753 lncRNA upstream 623725 43041950 ~ 43047774 (-) False XLOC_033101
TCONS_00064754 lncRNA upstream 628876 43047101 ~ 43051893 (-) True XLOC_033101
TCONS_00064755 lncRNA upstream 639237 43057462 ~ 43066469 (-) False XLOC_033102
TCONS_00065220 lncRNA upstream 639751 43057976 ~ 43072882 (-) True XLOC_033102
TCONS_00064309 mRNA downstream 20474 42377911 ~ 42388608 (-) False XLOC_033095
TCONS_00064307 mRNA downstream 31775 42369999 ~ 42377307 (-) False XLOC_033094
TCONS_00064306 mRNA downstream 39896 42345005 ~ 42369186 (-) True XLOC_033093
TCONS_00064304 mRNA downstream 72087 42291308 ~ 42336995 (-) False XLOC_033092
TCONS_00064305 mRNA downstream 72095 42291345 ~ 42336987 (-) True XLOC_033092
TCONS_00064315 mRNA upstream 514532 42932757 ~ 42949184 (-) False XLOC_033097
TCONS_00064317 mRNA upstream 533735 42951960 ~ 42971184 (-) False XLOC_033098
TCONS_00064319 mRNA upstream 557053 42975278 ~ 42983843 (-) True XLOC_033099
TCONS_00064320 mRNA upstream 583739 43001964 ~ 43007264 (-) False XLOC_033100
TCONS_00064321 mRNA upstream 584603 43002828 ~ 43005901 (-) True XLOC_033100
TCONS_00064287 other downstream 1323635 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064277 other downstream 1462607 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064263 other downstream 1589316 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 1641411 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 1741619 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064318 other upstream 534534 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064336 other upstream 839620 43257845 ~ 43260324 (-) False XLOC_033105
TCONS_00064349 other upstream 1371912 43790137 ~ 43890462 (-) False XLOC_033109
TCONS_00064350 other upstream 1413800 43832025 ~ 43890432 (-) False XLOC_033109
TCONS_00064351 other upstream 1429635 43847860 ~ 43890462 (-) False XLOC_033109

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU564570 True 2028 lncRNA 0.46 3 CI01000340 10689846 ~ 10692943 (+)