Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006424 |
| length | 1011 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 6 |
| gene id | XLOC_003256 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 11374021 ~ 11375944 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-141216-39 | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. |
| ensembl_id | ENSDART00000170806 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008391 | lncRNA | upstream | 14306 | 11359421 ~ 11359715 (+) | True | XLOC_003253 |
| TCONS_00006410 | lncRNA | upstream | 101707 | 11267906 ~ 11272314 (+) | False | XLOC_003248 |
| TCONS_00006406 | lncRNA | upstream | 133077 | 11239448 ~ 11240944 (+) | True | XLOC_003247 |
| TCONS_00008390 | lncRNA | upstream | 308229 | 11065500 ~ 11065792 (+) | True | XLOC_003244 |
| TCONS_00008553 | lncRNA | upstream | 701013 | 10669452 ~ 10673008 (+) | True | XLOC_003241 |
| TCONS_00006441 | lncRNA | downstream | 128070 | 11504014 ~ 11513412 (+) | False | XLOC_003268 |
| TCONS_00006446 | lncRNA | downstream | 128423 | 11504367 ~ 11513412 (+) | True | XLOC_003268 |
| TCONS_00006447 | lncRNA | downstream | 212134 | 11588078 ~ 11590676 (+) | True | XLOC_003269 |
| TCONS_00006451 | lncRNA | downstream | 401423 | 11777367 ~ 11780863 (+) | True | XLOC_003270 |
| TCONS_00006452 | lncRNA | downstream | 416464 | 11792408 ~ 11796299 (+) | True | XLOC_003271 |
| TCONS_00006421 | mRNA | upstream | 11564 | 11360641 ~ 11362457 (+) | False | XLOC_003254 |
| TCONS_00006422 | mRNA | upstream | 12253 | 11360799 ~ 11361768 (+) | True | XLOC_003254 |
| TCONS_00006418 | mRNA | upstream | 25316 | 11347031 ~ 11348705 (+) | False | XLOC_003251 |
| TCONS_00006419 | mRNA | upstream | 25875 | 11347177 ~ 11348146 (+) | True | XLOC_003251 |
| TCONS_00006415 | mRNA | upstream | 54168 | 11303458 ~ 11319853 (+) | False | XLOC_003249 |
| TCONS_00006427 | mRNA | downstream | 11565 | 11387509 ~ 11389462 (+) | False | XLOC_003258 |
| TCONS_00006428 | mRNA | downstream | 11738 | 11387682 ~ 11388681 (+) | True | XLOC_003258 |
| TCONS_00006429 | mRNA | downstream | 31948 | 11407892 ~ 11409744 (+) | False | XLOC_003259 |
| TCONS_00006430 | mRNA | downstream | 32050 | 11407994 ~ 11408963 (+) | True | XLOC_003259 |
| TCONS_00006432 | mRNA | downstream | 43242 | 11419186 ~ 11421106 (+) | False | XLOC_003261 |
| TCONS_00006423 | other | upstream | 839 | 11372886 ~ 11373182 (+) | True | XLOC_003255 |
| TCONS_00006417 | other | upstream | 27922 | 11345803 ~ 11346099 (+) | True | XLOC_003250 |
| TCONS_00006412 | other | upstream | 99421 | 11271934 ~ 11274600 (+) | False | XLOC_003248 |
| TCONS_00006409 | other | upstream | 99464 | 11267890 ~ 11274557 (+) | False | XLOC_003248 |
| TCONS_00006384 | other | upstream | 1475391 | 9898513 ~ 9898630 (+) | True | XLOC_003238 |
| TCONS_00006426 | other | downstream | 10418 | 11386362 ~ 11386658 (+) | True | XLOC_003257 |
| TCONS_00006431 | other | downstream | 42089 | 11418033 ~ 11418323 (+) | True | XLOC_003260 |
| TCONS_00006434 | other | downstream | 53449 | 11429393 ~ 11429689 (+) | True | XLOC_003262 |
| TCONS_00006437 | other | downstream | 65516 | 11441460 ~ 11441756 (+) | True | XLOC_003264 |
| TCONS_00006438 | other | downstream | 74211 | 11450155 ~ 11450442 (+) | True | XLOC_003265 |
