RNA id: TCONS_00064323


Basic Information

Item Value
RNA id TCONS_00064323
length 1854
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_033101
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 43019642 ~ 43051893 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTATGAATGTGTAAAAGCATGACACGACTCATACACAAATTAAAGTGACGTCAAGACGCGTCCTATCCAAAGTTCTGCGATATTAGTCTTGTTTTGTTTACTATAGCTGCGGTAGCCTGAGGTTGAGTGTGGAGAGAAAATGGAgGTGTGAAGTGATTCTCTTCATCTGATGTGGACAGTCTGATTGGTTTATGGCTCTGATTATTGCTCTCTCGCGTTCTCTTCACCTGCAGCACAAACTGCGGGTGGGTTTAGCATCAGTTTCCGCTCGCAGTATGTCATCATTAAACACACGAGCCCGGGCTGTGTTTTCTGCAGCAGTTGAAGGTGTGCATCCTGACATGGTGGTCCGCAGGGGTCTGGAGAGACATGGTGACAAACTCCATGTTGGTGGACAGAGCTTCACACTTACCAATAACCTGTATCTGGTGGGCTTTGGTAAGGCTGTGCTTGGGATGGCAGCAGAAGCAGAGAGGATTGTCGGGGACCATCTAATAAAAGGGGTGGTCAGTGTGCCACATGGTATCCAAAATACACTGCGCAGTCATGGCAAAGAGAAAATGCTGCTTGAGAGTAACAGCAGAATAACAGTCATGGAAGGAGCAAAGCACAATTTACCAGACACAGATGCTCAGAAGTCTGCAGAGTGCATTCGGGATCTGGCCAGCAGTCTGACTGAGAAAGATCTGCTGCTTGTGCTCATTTCAGGTGGTGGTTCTGCTCTCTTGCCAGCTCCAGCTCCACCCATGTCCTTGCAGGAGAAACAGGATGTGACCCGAAAACTCGCCGCAGCAGGGGCTACAATTCAGGAGTTAAACACAGTGAGGCGAGCTCTGTCATTGTTAAAGGGTGGAGGCCTTGCCCAGTGTGCCAGCCCAGCCAAGGTGGTGGCTTTGGTTCTGTCAGATGTTATTGGAGATCCTCTGGATTTGATAGCCAGTGGCCCAACAGTCAGGAGTGACTCCTCACCAGAGGAGGTCTGGGCTATCTTGGATAATTATAAACTCTCTGACTCTCTTCCGTCCTCTGTAAAAGAGGTGCTTAGTAAATCTATGTCCGGCCAGGGGTCGCGGGTTAAGAACCAGCCACAAGAAGTTAAAGacaatgttttaaatgttgtaaTTGGCTCAAACACTATTGCACTTGAATGTGCAAGCCGCAAGGCCAGTGAATTAGGACTTAGACCAGTCATTCTGTCTCCAGGAGTATGTGGTGATGTTCGCTCTGTTGCTCGACTATATGGGTTGCTTTCGAGTTTTGCATGCTCCCCAGGAAAGGAACCTCCTCCAGAACTTGCTGCAGAGATACTTAAGCTAGGGCCAGAGGTCGGGATAGAAAGCTGGGACTTGTGTCGCACCATGAATGTACTCGTGGGGGAGAGGAAAGAAGGCTGGGGTGCGACCTGTCTGCTTGCAGGAGGAGAACCCACAGTGAAACTGAGTGGAAAAGGCAGGGGAGGAAGGAACCAGGAGCTGGCCATGCGGGTGGGGCTTGAGCTCAGCCAAGGAGAAGTGAAGAGTGGTGCAGTGTTTCTCAGTGGAGGAACCGATGGACAGGACGGCCCGACTGAGGCAGCTGGGGCCGTCGCTGATGGGGAACTGAAAGAAGAGGCTGCGTCTCAAGGGCTGGACACTGACAGCTTTCTCGCCAACAATGATTCATTCACCTTCTTTTCAAAGCTTTCTGAAGGACGACGGTTACTCAACCCTGGACTGACAGGGACCAATGTGATGGATGTCCATGTTATGCTGCTGCCACCATCACCCCAAAAAGACCTCCAGTAGTTTGACACTAGGTTGATTTATTTGAAAGCAACACAAATTTGGGGGTAATAAATGATTTTTCTGCTCTAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008887 glycerate kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko00030 Pentose phosphate pathway
ko00630 Glyoxylate and dicarboxylate metabolism
ko00680 Methane metabolism
ko00561 Glycerolipid metabolism
ko00260 Glycine, serine and threonine metabolism

ZFIN:

id description
ZDB-GENE-061013-308 Predicted to enable glycerate kinase activity. Predicted to be involved in protein phosphorylation. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in D-glyceric aciduria. Orthologous to human GLYCTK (glycerate kinase).

Ensembl:

ensembl_id ENSDART00000149092

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064316 lncRNA downstream 70930 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00065219 lncRNA downstream 603880 42410224 ~ 42415879 (-) False XLOC_033096
TCONS_00064310 lncRNA downstream 640127 42378863 ~ 42379632 (-) True XLOC_033095
TCONS_00064308 lncRNA downstream 642475 42374820 ~ 42377284 (-) True XLOC_033094
TCONS_00065218 lncRNA downstream 1566871 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00064753 lncRNA upstream 13680 43041950 ~ 43047774 (-) False XLOC_033101
TCONS_00064754 lncRNA upstream 18831 43047101 ~ 43051893 (-) True XLOC_033101
TCONS_00064755 lncRNA upstream 29192 43057462 ~ 43066469 (-) False XLOC_033102
TCONS_00065220 lncRNA upstream 29706 43057976 ~ 43072882 (-) True XLOC_033102
TCONS_00064337 lncRNA upstream 236722 43264992 ~ 43266006 (-) False XLOC_033105
TCONS_00064320 mRNA downstream 12495 43001964 ~ 43007264 (-) False XLOC_033100
TCONS_00064321 mRNA downstream 13858 43002828 ~ 43005901 (-) True XLOC_033100
TCONS_00064319 mRNA downstream 35916 42975278 ~ 42983843 (-) True XLOC_033099
TCONS_00064317 mRNA downstream 48575 42951960 ~ 42971184 (-) False XLOC_033098
TCONS_00064315 mRNA downstream 70575 42932757 ~ 42949184 (-) False XLOC_033097
TCONS_00064327 mRNA upstream 48246 43076516 ~ 43092175 (-) True XLOC_033103
TCONS_00064328 mRNA upstream 190581 43218851 ~ 43221581 (-) True XLOC_033104
TCONS_00064329 mRNA upstream 191921 43220191 ~ 43251192 (-) False XLOC_033105
TCONS_00064330 mRNA upstream 194254 43222524 ~ 43233373 (-) False XLOC_033105
TCONS_00064331 mRNA upstream 197525 43225795 ~ 43233700 (-) False XLOC_033105
TCONS_00064318 other downstream 48841 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064312 other downstream 601651 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064314 other downstream 603880 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064313 other downstream 604097 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064287 other downstream 1934312 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064336 other upstream 229575 43257845 ~ 43260324 (-) False XLOC_033105
TCONS_00064349 other upstream 761867 43790137 ~ 43890462 (-) False XLOC_033109
TCONS_00064350 other upstream 803755 43832025 ~ 43890432 (-) False XLOC_033109
TCONS_00064351 other upstream 819590 43847860 ~ 43890462 (-) False XLOC_033109
TCONS_00064352 other upstream 851105 43879375 ~ 43890427 (-) True XLOC_033109

Expression Profile

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