RNA id: TCONS_00006425


Basic Information

Item Value
RNA id TCONS_00006425
length 429
RNA type mRNA
GC content 0.50
exon number 4
gene id XLOC_003256
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11374021 ~ 11375944 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGAATACACAGATGATGATGCTCTCATCCCCAAAAACACGTCGGTCATCATCAGACGGGTCCCTGCTGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCCAAATCCTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgaGAATCTGGCTGAGGCAAAGGCATCAGAGGAGGACAAGCTAAAAGCGATGATGTACCAGTCCAGTCTGTGCTACTACTCCAGCAGGTGA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-39 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000192953

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008391 lncRNA upstream 14479 11359421 ~ 11359715 (+) True XLOC_003253
TCONS_00006410 lncRNA upstream 101880 11267906 ~ 11272314 (+) False XLOC_003248
TCONS_00006406 lncRNA upstream 133250 11239448 ~ 11240944 (+) True XLOC_003247
TCONS_00008390 lncRNA upstream 308402 11065500 ~ 11065792 (+) True XLOC_003244
TCONS_00008553 lncRNA upstream 701186 10669452 ~ 10673008 (+) True XLOC_003241
TCONS_00006441 lncRNA downstream 128851 11504014 ~ 11513412 (+) False XLOC_003268
TCONS_00006446 lncRNA downstream 129204 11504367 ~ 11513412 (+) True XLOC_003268
TCONS_00006447 lncRNA downstream 212915 11588078 ~ 11590676 (+) True XLOC_003269
TCONS_00006451 lncRNA downstream 402204 11777367 ~ 11780863 (+) True XLOC_003270
TCONS_00006452 lncRNA downstream 417245 11792408 ~ 11796299 (+) True XLOC_003271
TCONS_00006421 mRNA upstream 11737 11360641 ~ 11362457 (+) False XLOC_003254
TCONS_00006422 mRNA upstream 12426 11360799 ~ 11361768 (+) True XLOC_003254
TCONS_00006418 mRNA upstream 25489 11347031 ~ 11348705 (+) False XLOC_003251
TCONS_00006419 mRNA upstream 26048 11347177 ~ 11348146 (+) True XLOC_003251
TCONS_00006415 mRNA upstream 54341 11303458 ~ 11319853 (+) False XLOC_003249
TCONS_00006427 mRNA downstream 12346 11387509 ~ 11389462 (+) False XLOC_003258
TCONS_00006428 mRNA downstream 12519 11387682 ~ 11388681 (+) True XLOC_003258
TCONS_00006429 mRNA downstream 32729 11407892 ~ 11409744 (+) False XLOC_003259
TCONS_00006430 mRNA downstream 32831 11407994 ~ 11408963 (+) True XLOC_003259
TCONS_00006432 mRNA downstream 44023 11419186 ~ 11421106 (+) False XLOC_003261
TCONS_00006423 other upstream 1012 11372886 ~ 11373182 (+) True XLOC_003255
TCONS_00006417 other upstream 28095 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006412 other upstream 99594 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006409 other upstream 99637 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006384 other upstream 1475564 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006426 other downstream 11199 11386362 ~ 11386658 (+) True XLOC_003257
TCONS_00006431 other downstream 42870 11418033 ~ 11418323 (+) True XLOC_003260
TCONS_00006434 other downstream 54230 11429393 ~ 11429689 (+) True XLOC_003262
TCONS_00006437 other downstream 66297 11441460 ~ 11441756 (+) True XLOC_003264
TCONS_00006438 other downstream 74992 11450155 ~ 11450442 (+) True XLOC_003265

Expression Profile

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