RNA id: TCONS_00064327


Basic Information

Item Value
RNA id TCONS_00064327
length 3497
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_033103
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 43076516 ~ 43092175 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGAGCCAGTCAGCGGATTCCCGTTGCAAGGAAGGATCCACGCACACTCGACCATGCGCTCAGCGGACGGTGAAAATTCGCGGCGTGGATGTAACGAGACGATGCCGCTGTGAAGCAGTTCGTCGCGCGGAACTTACAAACGACGTGATGGTGTTGATTATCTATGGATTTTCATTCATCGCTCGATCTTCTGTTCACAAGGACATAGATGCTGTATGTAGATACAGTAAGTGCATGAAGCAGTCTGCGCGCAGGGAGGACTTCAGTATCATTCGGAACGTGTAGATCGGAAAGCCGAAGAGGCCAACCCTCCAGTCCAGGATTCATGCTGTGAGGAAGTTTCAAACCTATATGAGCCCACGGGAACTACACCCTCCAAAATCTTCCGGAAGCTCTTTGACTCTGCTGTTCAAGCTTTCAGAGGGATAAAAGGGCTATTCTGCAACACATCTATTGAATAAGAATTTCACCTCCCCATCTCTTTGGCGCTACAAGTATTCTAGCTCTGATCTGAGGGATAAACACTTACATTCAGAATGGCTAGAGGGACTTTCTTTTTGGTAGTGGAGGGGCAGATTTGTTTCATCCTGCTTCTGGCTGTACTTGGTCTCTCTTCGGTTCACAGTACAGAATGTCCGCAGCTTTGTGTGTGCGAGATCCGGCCTTGGTTCACACCCCAGTCCACCTACAGAGAAGCAACTACTGTTGATTGCAATGACCTTCATCTTACACGGATTCCCGGTAACCTGTCAGCCGACACACAGGTGTTGCTTCTGCAGAGTAACTACATTGCCAGAACTAGCGAGGAACTGGAGCAGTTACTGAATCTTACAGAACTCGATCTGTCCCAGAACAATTTCAGCAACATCCGTGACATCGGCCTGACCAACATGTCACAACTCACGACTCTTCACCTGGAGGAGAACCAAATAGTTGAGATGCCTGACTTCAGTTTGCAGGATCTTACCAATCTACAGGAGCTGTACATTAATCACAATCAGATCAGCTCCATTGCACCCAATGCCTTCGCCGGATTGCGTAACCTTCTGAGACTCCATTTGAACTCCAACAGACTCAAGGCCATCGACAGTCGTTGGTTTGaatcaacccccaacctggagatCCTTATGATTGGGGAAAATCCTGTGGTCGGCATTCTTGATTTAAACTTCAAACCTCTTACCAACTTGAGAAGCCTTGTCCTGGCAGGAATGGAGCTCACTGACATCCCAGGCAATGCATTTGTTGGACTGGACAACCTGGAGAGTCTCTCCTTCTATGACAATAAACTAGTTCGGGTTCCCCAGACTGCTCTGCAGAAGCTACCAAACTTGAAATTTCTGGATTTGAACAAGAACCCAATACATAAAATTCAAGAGGGGGACTTTAAGAACATGCTCAGGCTGAAAGAacttggcattaacaacatgggAGAACTTGTGTCCATTGATCGCTTTGCATTGGATAACCTCCCTGAGTTGACCAAACTGGAAGCCACCAACAATCCCAAGTTTTCCTACGTGAGCCGTTTAGCGTTCCGTGATTTGCCGGCACTAGAGAGCCTAATGCTCAATAATAATGCCCTAAACTCCCTCTACCAGGCAACGGCTGATTCTCTGCCCAACCTGAGAGAGATCAGCATCCACAGCAACCCACTCCGCTGCGACTGTGTAATCCAGTGGATGAGTTCCAACAAGACAACCATTCGATTCATGGAGCCTCTTTCTATGTTCTGCACCATGCCGATTGAAGTTAGAGGTCAGCGCGTGAGAGATGTGTTTTCTCGTGAACCTTCAGGCCAGTGTCTCCCAATGATCTCCCATGACACTTTCCCCAATCACCTCAACCTGGACATCGGGATGACGGTAGATCTTGACTGTCGTGCAATGGCTGAACCCGAACCGGAAATATACTGGGTGACACCATCTGGTAACAAAGTCATGATGGATACAGTGTCTGATAAGTACCAACTTAATAGTGCAGGAACTCTGCGTATATCCTACATTCAGGTGGACGACTCTGGGCACTACACCTGTGTAGCACAAAATACAGAAGGAGCGGACACTCGGGTGACCGCCATTCGAGTTAACGGGACTCTTCTGGATAGCACGCAGCTTATGAAGATCTACGTTAAACACACCGAGTCCCATTCCATTCTAGTGTCCTGGAAAGTGAACTCCAACGTCATGACGTCCAATCTGAAGTGGTCATCGGCTACTATGAAAATCGACAACCCTCACATTACCTATACTGCTAAAGTTCCTGTAGATGTCCATGAGTACAATCTCACACACCTTCAGCCGGCAACTGAGTATGAGGTGTGCCTTTCGGTTTCCAATATCCACCAACAGACTCAAAAATCCTGCGTCAATGTCACAACCAAGCACGCCACGTTTGCGGTGGAGATCTCCGAGCAAGGCACCAATACGGCTCTGGCTGCTGTCATGGGCACCATTCTGGCCATCATCAGCCTGGGCTCTATCACGTTGTACATTGCGAAGAGATGGAAGAGGAAGAACTACCATCACTCCCTGAAGAAGTACATGCAGAAAACCTCATCCATCCCTCTAAATGAACTCTATCCTCCCCTCATTAACTTATGGGAGGCAGACAGTGAAAAGGACAAGGACGGATCTTCAGACAATAAGCAGACACAGGTGGACACAACAAGAAGTTACTACATGTGGTGAAGCCTGCCAGACTTTTCCTCTCCTTTAGAGCACAAAGACACACCTTGGCTTATTTGTGCGCGAGAAAGACATGGATTTCCCTTTTTTCTGCTTTGCTTACCGCAAGCAACTATTCAGACTGATATCTCTGACTTTTTAGTAGAGTGTATTGCCTTTTCTTCTTCTTTGACTTTCAATATGGCAGCTTTGTTTAGCTTCCGAGACATGTTAGTAgctgtgctttttcttttttgtttattctatttTGATAGCACAGCGTAGATAAATGTCAAGGATTGACTTTGGGTCGATAGATGCTATACAGTACTCTATCTGATCCGATAAATTAATACGTCTTTGGCAGTATTCATAGAGAATGCAttgtttctttctctctttcgtaaGACAGTTTAACTGTTGTGCACTGAAATATATTAACTAATTTGTCTTTGGACTCCAGTGTAAGCTGACAAGTTGAGTTTAGACTTGATACACTGTCTATTGAAAAACGTTAGCGATTGTTCTGTAATGTTGTATCAACTATAATTTGAACATTTTGGATTTTTCTCAAAAGTCAATTTTTGATTTAGAAGGTATCTTCGCAGATTAATGAATTGTAAACCAGCAATAGAAACGTGAATGTTTAATAATTAGGTAGTAGAAAAAtgctttcgttttaattattcagattcttcttcttttttttaattggctaAAATCTGTTAATCACTTAATTTTGTTGTAATTTACACTTGCGAAATATGTTGCATATTACagtgcaaacaaaaataaaaaactgttttgttCAGATATTTTTTATACAATGA

Function

GO:

id name namespace
GO:0021628 olfactory nerve formation biological_process
GO:0071699 olfactory placode morphogenesis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071126-1 Acts upstream of or within olfactory nerve formation and olfactory placode morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in basal plate midbrain region; hindbrain neural keel; nervous system; neural plate; and somite. Orthologous to human LRRN1 (leucine rich repeat neuronal 1).

Ensembl:

ensembl_id ENSDART00000084389

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065220 lncRNA downstream 3634 43057976 ~ 43072882 (-) True XLOC_033102
TCONS_00064755 lncRNA downstream 10047 43057462 ~ 43066469 (-) False XLOC_033102
TCONS_00064754 lncRNA downstream 24623 43047101 ~ 43051893 (-) True XLOC_033101
TCONS_00064753 lncRNA downstream 28742 43041950 ~ 43047774 (-) False XLOC_033101
TCONS_00064316 lncRNA downstream 127687 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00064337 lncRNA upstream 172817 43264992 ~ 43266006 (-) False XLOC_033105
TCONS_00064338 lncRNA upstream 176334 43268509 ~ 43294761 (-) True XLOC_033105
TCONS_00064339 lncRNA upstream 254754 43346929 ~ 43349086 (-) True XLOC_033106
TCONS_00064354 lncRNA upstream 887536 43979711 ~ 44002542 (-) False XLOC_033111
TCONS_00065221 lncRNA upstream 896381 43988556 ~ 44002541 (-) True XLOC_033111
TCONS_00064322 mRNA downstream 28742 43019642 ~ 43047774 (-) False XLOC_033101
TCONS_00064326 mRNA downstream 47620 43023332 ~ 43028896 (-) False XLOC_033101
TCONS_00064325 mRNA downstream 48146 43023001 ~ 43028370 (-) False XLOC_033101
TCONS_00064323 mRNA downstream 48246 43019759 ~ 43028270 (-) False XLOC_033101
TCONS_00064324 mRNA downstream 48688 43020637 ~ 43027828 (-) False XLOC_033101
TCONS_00064328 mRNA upstream 126676 43218851 ~ 43221581 (-) True XLOC_033104
TCONS_00064329 mRNA upstream 128016 43220191 ~ 43251192 (-) False XLOC_033105
TCONS_00064330 mRNA upstream 130349 43222524 ~ 43233373 (-) False XLOC_033105
TCONS_00064331 mRNA upstream 133620 43225795 ~ 43233700 (-) False XLOC_033105
TCONS_00064332 mRNA upstream 155931 43248106 ~ 43270160 (-) False XLOC_033105
TCONS_00064318 other downstream 105598 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064312 other downstream 658408 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064314 other downstream 660637 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064313 other downstream 660854 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064287 other downstream 1991069 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064336 other upstream 165670 43257845 ~ 43260324 (-) False XLOC_033105
TCONS_00064349 other upstream 697962 43790137 ~ 43890462 (-) False XLOC_033109
TCONS_00064350 other upstream 739850 43832025 ~ 43890432 (-) False XLOC_033109
TCONS_00064351 other upstream 755685 43847860 ~ 43890462 (-) False XLOC_033109
TCONS_00064352 other upstream 787200 43879375 ~ 43890427 (-) True XLOC_033109

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_11005204_11007357.mRNA True 2997 mRNA 0.43 1 CI01000340 11004438 ~ 11007434 (-)
striped catfish (Pangasianodon hypophthalmus) TU28014 True 3646 lncRNA 0.40 1 NC_047596.1 8432140 ~ 8435785 (-)