RNA id: TCONS_00064332


Basic Information

Item Value
RNA id TCONS_00064332
length 6515
RNA type mRNA
GC content 0.40
exon number 11
gene id XLOC_033105
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 43220191 ~ 43387920 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTATTTCTGTGGAAGCAACTAGAGAACTTGTATTTCCGCGAGAAGAAGTTTGCTGTAGAGGTCAACGACCCACAGAGAAGAACAGCTTCTAGACGCACATTTGGTCAGTCTGGCCAGGCCATCCACACGTGGTATGCCAGCCACTCTCTGATCAAAACCATCTGGGTGATGGCAATCAGCCAACACCAGTTCTACCTGGACCGCAAACAAAGTAAAGTAAGTATGCATCAAAGTTGGCACATCTTCAGTACTCACAATTATTAGAAACGCACAAATCATTGCTTTGTTTCTACACTGATAGCATGCAAAAGTATTTaagatggtgttttttttttttttgaaggctAAAATAACAACAGCAAGAAGTTTGGGCGATATTGCTATGGATCTCACAGAGACTGGAGCTCCACGGAACAGTAAGCTGGTCAGCATGGAGAGTAAAGACAAGCTCATCATGGCCAGCAATGGAAGTTTGGTCTCTTCCAGTAAGACAATCTTGTTTCTCCCATTTCCAAGAACAGCCTGTAGTGAACTCTGCCATTCATATCGATGGCATGATCGAGGACACTTTTGCTTTCATTTAGATTCTGCAGACAATGATGTGAATGAGGAACAGAAGAAAGAGAAAATAGCAGAACTCAAGGACAAACAGGAGAAAATTAAGCAAATTCTGGCACTGAAGGAAGAAGAGCTGAAGAAAATGTGCCTCCGGGAAGCTgaGTTGACCGGTGTGTTGCCTAAGGAGTTTCCTTTGGCATCAGGAGAAAAGCCCCCCACCATCCGAAGGCGTGTGGGAACTGCTTTTAAATTAGATGACCTTTTCCCTTATGATGCGGATCCTTGTTTAAGAAATCTAGAAAGCTGTTTCGCACTCCAGAAGAAGATCGTGGAGGCAGCGAGAAAACTTGCTCATGAAAACGAACTCGGGAAAACCGTGAAGAAGAAACGCAGGAGAAACCTTTTGGATGCTACCAAAAAACTCCAGGCCATCGAAAATGAGATTAATGATTACAGAGTGAAGATTGGCAAGGAGCCCACACAAAGAGCTTCCGTCATCATTGCTGATGATGTTAACCTTGACAGCCTTTCAGACTGCCTGAATTTGGATGATGACGAGCCGTCACAGAGACAGCGTTCGCGTTCAGTACAGTATTCTCCGCTTCCCAACTCCTCTGGCTCCTTCACTGCATCCTACCATTCAGATCAACTAGATCACGCCAATGACGACTACAGCAACTGCAGCAGATTAAATTATGCTGAAGTCCAAGAACCTGTTGCCTATATTCACGAAGATGCCTTATCGACGCACAGCAGCCCTTACCGGCAACCTTTGCGACAACCTTCCGACTCGCGGAGCATGCCACCAACACCTCAGCTTCCCCGCAACGCCTACAGCAGCATCCAGCTCAGCACTCTTTATCGCCAGCGCAGCGGCAGTCTGGAATCTCAGTCGCAGTTTCTAACAGAGAGCGAGCCGTCAGAGCCCGTCTTCATTTCTGCTCCTCGTCGAAGCAACAGCACGGAGTTACTTGATGACGGCTCATCCTACACCAGCCAGTCCAGTGTGGAGTACTCCGCGCCTCATTCCCGTGCCAAAAACCGCCATCGACGGAGACAGGGCAACATATATGCCAACACGGGAAGCATGCCCAACCTAGCACAAAACGACACGCGGGGTTACATATCCCAATCTCAACATCCGCAAACCACCACGGCCTATTACGTTACTGGATATCCACGGTACATCGAACCTGAAGTCTATCCAAATGGACCATACATGTATGAAAGCGAGATGGAGGGACACTATAATGTGAACCCATCCTACCATAGACATGAGCCACATGGAAACTACGCTCAGGATGAGATGGACGGTTTGTCTCATAATCTCTATGCCACATTAAGACCACCAAGGAATCGTCCTCCATCCAGGAATGACAATTTAGTCAAAAACATGCAAAGGGCTGAAGTGGTGGAACACTTGCGGGGTTGGTACAATAGACAGCACAAACCACAAGGGTATGATGCGTACAGGGCGCCACAGCAGAGTTTGAACTACAGGACCATGTCAACGAGTTATGTACGCAGCGACAGTACAGCTTCCTACTCAACAGTTGGTTCGGGGAACTGGCACGGTCAACCAGTCATGGCAATGTCAGAGTATGAAATGCCTCTCGCACACCATCAGTCCTACGGCTACAACACTGTCCATCACAGTCACCCGTTACACAGCAGCCCTGACCCCCGTCTGCTGGCTCCGCCTCCTGACCCTCTTTTGGACAGATTCCCACCCGAGTACGGGTGGATGACTCCGGGCAGGAGAAGCCCATTGCCAGTGCCTTTAGAGGTGCCTGGTGCTGTTGCCAGTGGTTATGACCCGGATTACTTTTACACTGATTGCTAGTGAAAGAGACAACACGTAAAACAGTGATCCTACATAGACGTGAGCCAGCACGATTCCCACACCAGCAGCCCGATGGACAGCAGCTTTGACTCTGAAGACCAGCAGACGATATACTGGCATGAAGACTCCAAACCTGGAACAATAGTGTAGAGAGTGAGACAAACTGTTTTCTGTTCGCTCTCAGGTGCCTTCTTATGCTTATTAATGGCAGAAAAGTTTTTAACTTGAGGAATGCAGCCAGACGAGAGGCATGCGGAGTCGATCCTGCCAGGCGACTTGAGAGAGGGAGGACAATGCATTCTCTCTATGAACACTTATGGGATAGCACTTCACCTTCAACACACAGAGACACTGTGGGGGAGGTTTTTTTTCCGATGCTGTGGGGCTGAATGAACTGGGTATGCTGTTTAAACCCCAGTCTGTGACATTGAAGGATTTGACATTAATACTTCACTATGATATGAAGGATTCAAAGCAGATTTCTCTTTCTTGTGTGCAAACATATTCTGCAATGCTGATCTTTAGTTCTTTTTAAGTTGTGTGTTCATAGACTGAACACAAAACTGCGCGACAGCTTTTCCTTCAGTGTTTCATTCATTCGCATTCAGCATAACCGGGTCTTTTACTGGAAAATTGAAACTCTCAACAACTATATTCACACTTGTATTCTTCAAGCTTTTGACATTTTTCTGAacacaaaacagtattttttcaCTCTTTTGCATTCATAATAACAGTTATCTGCCATTTCTGGCATTTCCATTTGGTTAACGTTGTTAAAACTAACATTTGGACCAATCACAAAGCAGTATTTCTGTTTTCAAGCATACCAAGTACTTGTAAATCGTCTCGGTGTCATCTTGGGTCGGTGCCAAGTGTTCAACCTCCTTTCTAATCCTGCTCAAGTGGAGTGCAACAGCTCTAATTACTGACACCTCAccgtttaattgtatttataccGTCACTAACAATTAGGCAGGTACAATTGTGGTCATTTACTGCACTTTTATACCCTATTGGACTTTGGAAGATTGAAAAGCGTGAcccatctctctttctcttcagAAGGGAATTGTACATGTatttgtaaatactgtaaaaacatttgatacttttttcttctttgttttttgtactttttagagagatttgtttttatcatttggaaagtatataatatatagtttggATTTCTCAAGCTGGTTCTTAGTAATTTGTCTAAAAATATTCATCGGAATTAAAAGCCAAAAACCAACATTGGTCGCCTTTATTTGGGTTAATATTGTGCATGAACGGTTGAGTGCATTTAATAGGAAATCTCACTTTCATAATGACTTTATAAGGAAATGCCACCTGCTGGGATGCAATAGGGAAGTTGCAGGCTTCACTGAGCCTATCTTCAACTGCTTTTAGTACTATAAAAATGATGGTTGTATTGTGTGTTTTGGCCTACTTGCTTGGTCCACACCATGGTTGGATGGCATTTACACGAGGTCTTTGCAAGAAAAAAGTCTGACATTTTTGCATGCGTTTTTTTGTATTCATATGTGAAAAATTTGTGAAAAATGTGAAAAGCGGGGAAAAACAAACCTGGTTCCACGTTTTGTTTTAAATGACGGACAAAAGTTTAAGAGGCAGTGTGTCGATACGATTCACACAATGTGAGgtcgatttatttttttttaacatgttaaatTTACGGACAAAAATTTCGGATTTAGTGTGCAATAACCTGCATACAaacctttgttttttatttaaattaatagttaaattacattaaatccTCGCActcaacactttaaaaaaaattgactcaAATTtataaggcaacttgctgcagagcttgTTTGAGTTGACTCAGCTTTTAACCCAAGGACTGCACTTGACTCAGTTTAAGTTGAgtcagctcaaaaaaaaaaagctttgcagcaagttgccttaaaaagttgagtcaactttttttttttttttttcagtgaaatgGTTCCAAACTTTTAAGAATTTCATTCTTCTGTAGAACATAAAACAGGATATTCTGAATATTGTTggggaaaaagcagccattgacatccatagtagaaatgaaaaatactatggaagttaatggtatTCAGTATTTTTAAGTATAGTTGCCTTTGTactcagaagaagaaaaaaagctcaAAGAGGCTTGAAACAATTGGAGGATGATTACATTATCATTTTGCGGTAAACTGTCCTTTTAACCAAAGCTCAACTTAGATCACTTTATCCAGTAATGTTTACCTTTTTTAATTCAAAGGTGAAAAAGCTGCTTATTTGTAGTAAaagtatatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatttctaGCTAAAATATTTTATAGGGTTATAAGTTTGCTTGTAAAAGTGCTCCTATTAAAGCTACACACTCTAATAGTTAGGTTGATTTTTCTCATGAGAACAGGCAGGCCGTCATCATGCATAAACTACAGTATCAAACCAGAAGAACGTGTTTTAAGTGTCATGAGCCACTCCTGTAAAGATAAGTAATCAGTCATCTGTGTACAGAATGAGGTAAAGAGAGATCATGCGACTGACCTGCTTTCTATGCTACAcctttaataaatatacataatgcataaatacattataataacGCATTGCTAAAgtttaaattcattaaaatgtttctaaaaaaaaaacaattaacattttgTGACCTTCACATTCTGTGACATTCTGATTTTGATACAAACTCATAacttaaacactgtaaaaaaatgaagtTAGGCTTTGTGTAACTTAAAACATTTACTTGAAACctgatataaaaatattaaaatatgttaaagcaacataaaatatttgttgtcttgactttttgtcttgACATTTTTACGGTGTGTACAGACCATTTTAATgtagtgatgtcattggcccatgaacatttccttctCATTGTCAAACCATTGCATAATTGTAACTAGAGGCAATTTACTCATAACTTAGGATTATAACCGCAAACATAACATTAATTATCAATATGTAGATCTTTTTAGATTCTCAGAAGCCatagaaattaaatatgtatcaCAGGAAATATGTCAGGACCATTGTTATagtttacatccttcaaaatggtctgtatatacacatgtatatgaTGCTAAATATACTGCAAGgactatatttaatttaaaataaacaatacgtTTAACTGGAGAAAACATAATTTCCTTGACCTTTTTTcaatattgtattataaatataataacaatcataaacCGAGGAGGAAAAATCAGAGTTCAACAAGCATCAAAAAAGGGAAATCCTTTACCTCCATACTATATGTTAGAATGTGTTTTGGTTCTTTTGAgccaaataaatataattcagcAGATGGACAAAagtgtacactcaaaaatatatttttaataaaccgTTTTCTGTATTTGGTGTTTTTTCACttgtttatgctttataaatgtattatggtcatgtatgtcggtggacttgagatgcagagaagagttCGAGTCTGGAGAAGAACGGGTttagaaagtgggtaagacaaaaacagagtaaaaaaaataaataaataaacaagtaaataacatcgtgaggatgtggtaaaatctgaatacgtggtaaaaaatcaggtgaaggcttttctttttctagattgcttttgaaaacactatcggttgggtttagggaagtgggtgggcgctggtcaattggtgctttagaaaacactatgttggatttagggaaggaggagggtgggtcagtcgatcactcagtcagtcagtcgacagcggcctctggtggatttacgagagaacagcaggcacaaatagcactcacaagagaaatttgagatctcaaaaaaagtacacagcggcctctggtggattcgcgaaaacaaaaagtgcaaaaaagcgatgctcctgggacgtattttctGTTCTCCAGGAATGTAAATAGGGCTAaatttgagagggtgctcgctgcagagccatttgagcaaagctgagctcca

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005912 adherens junction cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130412-1 Predicted to enable cytoskeletal protein binding activity. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction and bicellular tight junction. Orthologous to human FRMD4B (FERM domain containing 4B).

Ensembl:

ensembl_id ENSDART00000180990

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065220 lncRNA downstream 175224 43057976 ~ 43072882 (-) True XLOC_033102
TCONS_00064755 lncRNA downstream 181637 43057462 ~ 43066469 (-) False XLOC_033102
TCONS_00064754 lncRNA downstream 196213 43047101 ~ 43051893 (-) True XLOC_033101
TCONS_00064753 lncRNA downstream 200332 43041950 ~ 43047774 (-) False XLOC_033101
TCONS_00064316 lncRNA downstream 299277 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00064339 lncRNA upstream 76769 43346929 ~ 43349086 (-) True XLOC_033106
TCONS_00064354 lncRNA upstream 709551 43979711 ~ 44002542 (-) False XLOC_033111
TCONS_00065221 lncRNA upstream 718396 43988556 ~ 44002541 (-) True XLOC_033111
TCONS_00064365 lncRNA upstream 2605082 45875242 ~ 45879140 (-) True XLOC_033117
TCONS_00065222 lncRNA upstream 2653782 45923942 ~ 45929175 (-) True XLOC_033118
TCONS_00064331 mRNA downstream 14406 43225795 ~ 43233700 (-) False XLOC_033105
TCONS_00064330 mRNA downstream 14733 43222524 ~ 43233373 (-) False XLOC_033105
TCONS_00064328 mRNA downstream 26525 43218851 ~ 43221581 (-) True XLOC_033104
TCONS_00064327 mRNA downstream 155931 43076516 ~ 43092175 (-) True XLOC_033103
TCONS_00064326 mRNA downstream 219210 43023332 ~ 43028896 (-) False XLOC_033101
TCONS_00064340 mRNA upstream 167914 43438074 ~ 43449013 (-) True XLOC_033107
TCONS_00064341 mRNA upstream 221475 43491635 ~ 43498996 (-) True XLOC_033108
TCONS_00064342 mRNA upstream 331983 43602143 ~ 43882696 (-) False XLOC_033109
TCONS_00064343 mRNA upstream 332116 43602276 ~ 43792179 (-) False XLOC_033109
TCONS_00064344 mRNA upstream 332142 43602302 ~ 43769332 (-) False XLOC_033109
TCONS_00064318 other downstream 277188 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064312 other downstream 829998 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064314 other downstream 832227 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064313 other downstream 832444 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064287 other downstream 2162659 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064349 other upstream 519977 43790137 ~ 43890462 (-) False XLOC_033109
TCONS_00064350 other upstream 561865 43832025 ~ 43890432 (-) False XLOC_033109
TCONS_00064351 other upstream 577700 43847860 ~ 43890462 (-) False XLOC_033109
TCONS_00064352 other upstream 609215 43879375 ~ 43890427 (-) True XLOC_033109
TCONS_00064360 other upstream 984561 44254721 ~ 44280214 (-) True XLOC_033114

Expression Profile

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