RNA id: TCONS_00064334


Basic Information

Item Value
RNA id TCONS_00064334
length 4516
RNA type mRNA
GC content 0.46
exon number 24
gene id XLOC_033105
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 43220191 ~ 43387920 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGAACagtatttacatgtatgtgttcATCCCATGCTCGCGCGAGTCAATGGCGTTCATATCCCCATGGTAACGACAGAGGGAGATTCGCCTGCTCCGGCTGGGCTGAAGGGGCGGAGGAGGAGAACAGAGAGGCAGCGGTAAACCAGTCAACGGACACCGCTTCACCGACACTGCCCGAGTCCTCACAAACCTGTCATGAACTCTATCACCGGCTGCTATTGCTTTGCACGCCGGCTTTCTCCTTGTGTTCATGACTCTGGAAGCGATATCACGGAGACCACGGAGTTATTTTAGCCTCCGgtaacaaaaaaagacaaaagatttTCGCCAACCTGGGGCTTGAACACAACAATACCGACCATAAAGAGAGatgACGGAGGGTCGGCTGTGTCAGGTGCTTCTCCTAGATGACCGGCAGCTGGAACTGCTGGTTCAGCCAAAACTACTGTCTCGAGATCtcctggatctggtttcatcacattttAACCTGAAAGAGAAAGACTATTTTGGAATCTCCTTTACTGATGAGAGGGGGCAGAAAAAGTGGCTTCAGCTGGACCGCAGGGTGCTGGATCATGACTTCAATAAAAAATCCGGACCACTTGAGCTCAAGTTTCAAGTCAGgttttacatTGAAAGCGTTGCATATTTGAAAGACGCTACCACTGTTGAACTGTTTTTCCGGAATGCCAAGATATCAGTCTACAACGAAAACATTGAAGTGGAGAGTGAGATCGTTTTTAAGTTAGCTGCGTACACTCTTCAGGAGGCAAACGGAGACTATACAAGTGATGAAAGCACAAGATCAGCCTTAAAAAAGCTTCCAGCTTTCCCTACTGCGGTTTTAAAGGAGCACCCGTCATTAACATTCTGTGAAGATAAAGTAATCGAGCGTTATAAGAAGCTAAAGGGACTCAGTCGTGGACAGGCTATTGTACGGTATCTGACCTTAGTTGAATCCTTGCCTGCATATGGAGTTCATTACTACAAAGTGAAGGACAAGCAAGGCCTACCGTGGTGGCTGGGGATTAGCTATAAAGGAATTGGACAGTACGACCTGCAAGACAAGCTCAAGCCACGAAAGCTATTTCTGTGGAAGCAACTAGAGAACTTGTATTTCCGCGAGAAGAAGTTTGCTGTAGAGGTCAACGACCCACAGAGAAGAACAGCTTCTAGACGCACATTTGGTCAGTCTGGCCAGGCCATCCACACGTGGTATGCCAGCCACTCTCTGATCAAAACCATCTGGGTGATGGCAATCAGCCAACACCAGTTCTACCTGGACCGCAAACAAAGTAAAgctAAAATAACAACAGCAAGAAGTTTGGGCGATATTGCTATGGATCTCACAGAGACTGGAGCTCCACGGAACAGTAAGCTGGTCAGCATGGAGAGTAAAGACAAGCTCATCATGGCCAGCAATGGAAGTTTGGTCTCTTCCAATTCTGCAGACAATGATGTGAATGAGGAACAGAAGAAAGAGAAAATAGCAGAACTCAAGGACAAACAGGAGAAAATTAAGCAAATTCTGGCACTGAAGGAAGAAGAGCTGAAGAAAATGTGCCTCCGGGAAGCTgaGTTGACCGGTGTGTTGCCTAAGGAGTTTCCTTTGGCATCAGGAGAAAAGCCCCCCACCATCCGAAGGCGTGTGGGAACTGCTTTTAAATTAGATGACCTTTTCCCTTATGATGCGGATCCTTGTTTAAGAAATCTAGAAAGCTGTTTCGCACTCCAGAAGAAGATCGTGGAGGCAGCGAGAAAACTTGCTCATGAAAACGAACTCGGGAAAACCGTGAAGAAGAAACGCAGGAGAAACCTTTTGGATGCTACCAAAAAACTCCAGGCCATCGAAAATGAGATTAATGATTACAGAGTGAAGATTGGCAAGGAGCCCACACAAAGAGCTTCCGTCATCATTGCTGATGATGTTAACCTTGACAGCCTTTCAGACTGCCTGAATTTGGATGATGACGAGCCGTCACAGAGACAGCGTTCGCGTTCAGTACAGTATTCTCCGCTTCCCAACTCCTCTGGCTCCTTCACTGCATCCTACCATTCAGATCAACTAGATCACGCCAATGACGACTACAGCAACTGCAGCAGATTAAATTATGCTGAAGTCCAAGAACCTGTTGCCTATATTCACGAAGATGCCTTATCGACGCACAGCAGCCCTTACCGGCAACCTTTGCGACAACCTTCCGACTCGCGGAGCATGCCACCAACACCTCAGCTTCCCCGCAACGCCTACAGCAGCATCCAGCTCAGCACTCTTTATCGCCAGCGCAGCGGCAGTCTGGAATCTCAGTCGCAGTTTCTAACAGAGAGCGAGCCGTCAGAGCCCGTCTTCATTTCTGCTCCTCGTCGAAGCAACAGCACGGAGTTACTTGATGACGGCTCATCCTACACCAGCCAGTCCAGTGTGGAGTACTCCGCGCCTCATTCCCGTGCCAAAAACCGCCATCGACGGAGACAGGGCAACATATATGCCAACACGGGAAGCATGCCCAACCTAGCACAAAACGACACGCGGGGTTACATATCCCAATCTCAACATCCGCAAACCACCACGGCCTATTACGTTACTGGATATCCACGGTACATCGAACCTGAAGTCTATCCAAATGGACCATACATGTATGAAAGCGAGATGGAGGGACACTATAATGTGAACCCATCCTACCATAGACATGAGCCACATGGAAACTACGCTCAGGATGAGATGGACGGTTTGTCTCATAATCTCTATGCCACATTAAGACCACCAAGGAATCGTCCTCCATCCAGGAATGACAATTTAGTCAAAAACATGCAAAGGGCTGAAGTGGTGGAACACTTGCGGGGTTGGTACAATAGACAGCACAAACCACAAGGGTATGATGCGTACAGGGCGCCACAGCAGAGTTTGAACTACAGGACCATGTCAACGAGTTATGTACGCAGCGACAGTACAGCTTCCTACTCAACAGTTGGTTCGGGGAACTGGCACGGTCAACCAGTCATGGCAATGTCAGAGTATGAAATGCCTCTCGCACACCATCAGTCCTACGGCTACAACACTGTCCATCACAGTCACCCGTTACACAGCAGCCCTGACCCCCGTCTGCTGGCTCCGCCTCCTGACCCTCTTTTGGACAGATTCCCACCCGAGTACGGGTGGATGACTCCGGGCAGGAGAAGCCCATTGCCAGTGCCTTTAGAGGTGCCTGGTGCTGTTGCCAGTGGTTATGACCCGGATTACTTTTACACTGATTGCTAGTGAAAGAGACAACACGTAAAACAGTGATCCTACATAGACGTGAGCCAGCACGATTCCCACACCAGCAGCCCGATGGACAGCAGCTTTGACTCTGAAGACCAGCAGACGATATACTGGCATGAAGACTCCAAACCTGGAACAATAGTGTAGAGAGTGAGACAAACTGTTTTCTGTTCGCTCTCAGGTGCCTTCTTATGCTTATTAATGGCAGAAAAGTTTTTAACTTGAGGAATGCAGCCAGACGAGAGGCATGCGGAGTCGATCCTGCCAGGCGACTTGAGAGAGGGAGGACAATGCATTCTCTCTATGAACACTTATGGGATAGCACTTCACCTTCAACACACAGAGACACTGTGGGGGAGGTTTTTTTTCCGATGCTGTGGGGCTGAATGAACTGGGTATGCTGTTTAAACCCCAGTCTGTGACATTGAAGGATTTGACATTAATACTTCACTATGATATGAAGGATTCAAAGCAGATTTCTCTTTCTTGTGTGCAAACATATTCTGCAATGCTGATCTTTAGTTCTTTTTAAGTTGTGTGTTCATAGACTGAACACAAAACTGCGCGACAGCTTTTCCTTCAGTGTTTCATTCATTCGCATTCAGCATAACCGGGTCTTTTACTGGAAAATTGAAACTCTCAACAACTATATTCACACTTGTATTCTTCAAGCTTTTGACATTTTTCTGAacacaaaacagtattttttcaCTCTTTTGCATTCATAATAACAGTTATCTGCCATTTCTGGCATTTCCATTTGGTTAACGTTGTTAAAACTAACATTTGGACCAATCACAAAGCAGTATTTCTGTTTTCAAGCATACCAAGTACTTGTAAATCGTCTCGGTGTCATCTTGGGTCGGTGCCAAGTGTTCAACCTCCTTTCTAATCCTGCTCAAGTGGAGTGCAACAGCTCTAATTACTGACACCTCAccgtttaattgtatttataccGTCACTAACAATTAGGCAGGTACAATTGTGGTCATTTACTGCACTTTTATACCCTATTGGACTTTGGAAGATTGAAAAGCGTGAcccatctctctttctcttcagAAGGGAATTGTACATGTatttgtaaatactgtaaaaacatttgatacttttttcttctttgttttttgtactttttagagagatttgtttttatcatttggaaagtatataatatatagtttggATTTCTCAAGCTGGTTCTTAGTAATTTGTCTAAAAATATTCATCGGAATTAAAAGCCAAAAACCAA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005912 adherens junction cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130412-1 Predicted to enable cytoskeletal protein binding activity. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction and bicellular tight junction. Orthologous to human FRMD4B (FERM domain containing 4B).

Ensembl:

ensembl_id ENSDART00000154434

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065220 lncRNA downstream 178083 43057976 ~ 43072882 (-) True XLOC_033102
TCONS_00064755 lncRNA downstream 184496 43057462 ~ 43066469 (-) False XLOC_033102
TCONS_00064754 lncRNA downstream 199072 43047101 ~ 43051893 (-) True XLOC_033101
TCONS_00064753 lncRNA downstream 203191 43041950 ~ 43047774 (-) False XLOC_033101
TCONS_00064316 lncRNA downstream 302136 42942705 ~ 42948829 (-) True XLOC_033097
TCONS_00064354 lncRNA upstream 591791 43979711 ~ 44002542 (-) False XLOC_033111
TCONS_00065221 lncRNA upstream 600636 43988556 ~ 44002541 (-) True XLOC_033111
TCONS_00064365 lncRNA upstream 2487322 45875242 ~ 45879140 (-) True XLOC_033117
TCONS_00065222 lncRNA upstream 2536022 45923942 ~ 45929175 (-) True XLOC_033118
TCONS_00064370 lncRNA upstream 2714294 46102214 ~ 46162585 (-) True XLOC_033120
TCONS_00064331 mRNA downstream 17265 43225795 ~ 43233700 (-) False XLOC_033105
TCONS_00064330 mRNA downstream 17592 43222524 ~ 43233373 (-) False XLOC_033105
TCONS_00064328 mRNA downstream 29384 43218851 ~ 43221581 (-) True XLOC_033104
TCONS_00064327 mRNA downstream 158790 43076516 ~ 43092175 (-) True XLOC_033103
TCONS_00064326 mRNA downstream 222069 43023332 ~ 43028896 (-) False XLOC_033101
TCONS_00064340 mRNA upstream 50154 43438074 ~ 43449013 (-) True XLOC_033107
TCONS_00064341 mRNA upstream 103715 43491635 ~ 43498996 (-) True XLOC_033108
TCONS_00064342 mRNA upstream 214223 43602143 ~ 43882696 (-) False XLOC_033109
TCONS_00064343 mRNA upstream 214356 43602276 ~ 43792179 (-) False XLOC_033109
TCONS_00064344 mRNA upstream 214382 43602302 ~ 43769332 (-) False XLOC_033109
TCONS_00064318 other downstream 280047 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064312 other downstream 832857 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064314 other downstream 835086 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064313 other downstream 835303 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064287 other downstream 2165518 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064349 other upstream 402217 43790137 ~ 43890462 (-) False XLOC_033109
TCONS_00064350 other upstream 444105 43832025 ~ 43890432 (-) False XLOC_033109
TCONS_00064351 other upstream 459940 43847860 ~ 43890462 (-) False XLOC_033109
TCONS_00064352 other upstream 491455 43879375 ~ 43890427 (-) True XLOC_033109
TCONS_00064360 other upstream 866801 44254721 ~ 44280214 (-) True XLOC_033114

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_11107554_11132757.mRNA True 3218 mRNA 0.49 24 CI01000340 11107495 ~ 11132757 (-)