Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006427 |
| length | 1011 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 6 |
| gene id | XLOC_003258 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 11387509 ~ 11389462 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-141216-41 | Predicted to enable ubiquitin protein ligase activity and zinc ion binding activity. Predicted to act upstream of or within mRNA processing and protein ubiquitination. Predicted to be located in nucleus. |
| ensembl_id | ENSDART00000159578 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006420 | lncRNA | upstream | 6622 | 11353459 ~ 11380887 (+) | True | XLOC_003252 |
| TCONS_00008391 | lncRNA | upstream | 27794 | 11359421 ~ 11359715 (+) | True | XLOC_003253 |
| TCONS_00006410 | lncRNA | upstream | 115195 | 11267906 ~ 11272314 (+) | False | XLOC_003248 |
| TCONS_00006406 | lncRNA | upstream | 146565 | 11239448 ~ 11240944 (+) | True | XLOC_003247 |
| TCONS_00008390 | lncRNA | upstream | 321717 | 11065500 ~ 11065792 (+) | True | XLOC_003244 |
| TCONS_00006441 | lncRNA | downstream | 114552 | 11504014 ~ 11513412 (+) | False | XLOC_003268 |
| TCONS_00006446 | lncRNA | downstream | 114905 | 11504367 ~ 11513412 (+) | True | XLOC_003268 |
| TCONS_00006447 | lncRNA | downstream | 198616 | 11588078 ~ 11590676 (+) | True | XLOC_003269 |
| TCONS_00006451 | lncRNA | downstream | 387905 | 11777367 ~ 11780863 (+) | True | XLOC_003270 |
| TCONS_00006452 | lncRNA | downstream | 402946 | 11792408 ~ 11796299 (+) | True | XLOC_003271 |
| TCONS_00006424 | mRNA | upstream | 11565 | 11374021 ~ 11375944 (+) | False | XLOC_003256 |
| TCONS_00006425 | mRNA | upstream | 12346 | 11374194 ~ 11375163 (+) | True | XLOC_003256 |
| TCONS_00006421 | mRNA | upstream | 25052 | 11360641 ~ 11362457 (+) | False | XLOC_003254 |
| TCONS_00006422 | mRNA | upstream | 25741 | 11360799 ~ 11361768 (+) | True | XLOC_003254 |
| TCONS_00006418 | mRNA | upstream | 38804 | 11347031 ~ 11348705 (+) | False | XLOC_003251 |
| TCONS_00006429 | mRNA | downstream | 18430 | 11407892 ~ 11409744 (+) | False | XLOC_003259 |
| TCONS_00006430 | mRNA | downstream | 18532 | 11407994 ~ 11408963 (+) | True | XLOC_003259 |
| TCONS_00006432 | mRNA | downstream | 29724 | 11419186 ~ 11421106 (+) | False | XLOC_003261 |
| TCONS_00006433 | mRNA | downstream | 29897 | 11419359 ~ 11420325 (+) | True | XLOC_003261 |
| TCONS_00006435 | mRNA | downstream | 41090 | 11430552 ~ 11432479 (+) | False | XLOC_003263 |
| TCONS_00006426 | other | upstream | 851 | 11386362 ~ 11386658 (+) | True | XLOC_003257 |
| TCONS_00006423 | other | upstream | 14327 | 11372886 ~ 11373182 (+) | True | XLOC_003255 |
| TCONS_00006417 | other | upstream | 41410 | 11345803 ~ 11346099 (+) | True | XLOC_003250 |
| TCONS_00006412 | other | upstream | 112909 | 11271934 ~ 11274600 (+) | False | XLOC_003248 |
| TCONS_00006409 | other | upstream | 112952 | 11267890 ~ 11274557 (+) | False | XLOC_003248 |
| TCONS_00006431 | other | downstream | 28571 | 11418033 ~ 11418323 (+) | True | XLOC_003260 |
| TCONS_00006434 | other | downstream | 39931 | 11429393 ~ 11429689 (+) | True | XLOC_003262 |
| TCONS_00006437 | other | downstream | 51998 | 11441460 ~ 11441756 (+) | True | XLOC_003264 |
| TCONS_00006438 | other | downstream | 60693 | 11450155 ~ 11450442 (+) | True | XLOC_003265 |
| TCONS_00006439 | other | downstream | 71344 | 11460806 ~ 11461102 (+) | True | XLOC_003266 |
