RNA id: TCONS_00064349


Basic Information

Item Value
RNA id TCONS_00064349
length 2406
RNA type processed_transcript
GC content 0.36
exon number 5
gene id XLOC_033109
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 43602143 ~ 43890462 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTTATTTACAGTGTGTTGTATAGCACGCGCGCGTGGTATACAGAATCGCGTGAAGAGTTGAATTTGTTATCTTCAGAAATTTCCGCGTCTCTCGCGTCCCTGTCAAAGCCCGaTACCTCAACGAGACCAAAGGAATTTAATTGTAGAGTCTACAATCATCTGTTCCGTCACCTCTTGAAACAATTGAACTGGCTGTGGCACATCCAATGGTTCCACCCCTTTGGTCCCTTCTCTGAGTTCTGATTGGAACAATGGAAGGCCAGTCTCCTCCAAACAAGTGACTCTGGCAGGAGAGTGCAGCGCTCCAGCCGTGTGGATGCTGAATGGGCAGGGAGGTTAAACGCAGCGCTGGAGCTAAAGACGGCCGCAAATAAGCAAGTCCTTGGATAAGGTAAACAAATGATTAGTTATtagacttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttgttgacGGACTGGAGAGGTCAGAACTGGTGCTATTATTCTATTTCTAGTTTAATGAATCACTTGATTTGTTGCAGCTCTTGTGTTTGTATTTTCAAGGTTGAGAAAAAAGGAGAGGTCGTTTATTTTCGCCAAAGTTTTCCACTAAACAGGATGCCTTATTTGCCTAACTGCACAGGTCTTTTATTCCCTTTGTTTCTTGTACTTTTCATTCTTAAGAGAGGATTTGACTTATTTGAATCCTTGTTTGCTTGCTGCAATAGTCAACATATTTAAAATGGGGCAAGAAACGACAAGACAAAATTGAGCCCCTGAATGaacagttcacaaaaaaaaaagaatattctgccatcatttactcatcctcgacTTGtgctaaacctgtttgagtttctttcttctgttgaacacagagtacctattgacttccatagtatttttattattgttttttttttttttactatggatgtGAATGCccaacatttttcacaatattttcttttgcgttcaacagaaaaaaattaactgTTATACGCAAAACCCCTTGAAAATGAGCAAGTGAAGAAAAGTaactgtttatttttgggtgaactctttaaTAGCACCAAGCAGTATTTGAAAGGTTTTGGAGCAAACCATAGCAGTGAAATAGGGGTGTTCATGTACTGGGTGTGAGATGGGGggagtttgtgtgtctgtgttctgTCTATGACAGTACGGTGCACGAGGAAGGGACTTCCCATCCATTCCCATGAGCTCATACTTgcagacacattcacacacacccaaATATCTAAAACTAGCCCGCtatgtgtttgttttctcttTCTGATTCTCTCACCATAATATATGCCTTAAAAAGCTTCTCCTGCCTTATCTTTTTTTGCATCATTTGTATGTTGATCTCCCATTTGTGTAATTACACTAAAGGCTGTAAAAATAATtagatgtattttattaaaatatttaaacctaaTCCTTATATGAATCTGAGATGGaatcataattttatttattttgctctgcCAAAAACAATAACctgcatttatttgttgtttctatcTGTTAACttgtataacatttttaaaaagcaatgtatTTAGGTTGATTCAGCAATGtaaagttgtattttattttatttttattctaaaaaataattcaatttgGAGGTTActgagcaattccagtgttatggattTAATAAAAACgcaaaatataaatttgcatagaaagtatatgttaacattatattgaaaaatctgtttatattttctaaaactaCTAACCACAAAGTTAtggaatcagaaaaaaatatcaatctgttaagatttttatatttaaatgaggaaaatatacATGCATTATCATGTGACcaaaaaaagtctgcaagtttacagtatacagcatGCTTTAGAAATTCTGTGTATTGAATTGCACAACCTTAAAgtaacaatgctaatcaaaagaaaTAAGATTTGGCTCACCATAGAACAAaattgatagatttttttttatttatttgacatgtttgcacttatgaggaaaaagcttcattTTAAATGTGACTGATGTGccaacatgggctcattctgaaaacatagccctgtaTATGTTTATgtagaattatgtagccagaggaatggCGGCATTTTCTCTTTAAAACTAATGTTACGGGGCACCTTTCATTAATGACACCGTTCGTTTTCGCGCTTACTAGCTGATCTCTTACCTCTATGTGGACGGCTTTtgcgctgttaccagtttgtccagtggcttgccgcTTACATGGCAGTATTTGAGACGTAAAGCAGAGTTGACCATGCCGATAGAGTTCAAGTCCAGCGgagaacagttccagaaacaggttagacaaaaacacagggcaaaaaaaaaaaataaaaaattaaataaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041203-1 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including gut; hatching gland; nervous system; pericardial region; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including Barrett's esophagus; congenital heart disease; esophagus adenocarcinoma; intellectual disability-severe speech delay-mild dysmorphism syndrome; and peritonitis. Orthologous to human FOXP1 (forkhead box P1).

Ensembl:

ensembl_id ENSDART00000148909

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064339 lncRNA downstream 441051 43346929 ~ 43349086 (-) True XLOC_033106
TCONS_00064338 lncRNA downstream 495376 43268509 ~ 43294761 (-) True XLOC_033105
TCONS_00064337 lncRNA downstream 524131 43264992 ~ 43266006 (-) False XLOC_033105
TCONS_00065220 lncRNA downstream 717255 43057976 ~ 43072882 (-) True XLOC_033102
TCONS_00064755 lncRNA downstream 723668 43057462 ~ 43066469 (-) False XLOC_033102
TCONS_00064354 lncRNA upstream 89249 43979711 ~ 44002542 (-) False XLOC_033111
TCONS_00065221 lncRNA upstream 98094 43988556 ~ 44002541 (-) True XLOC_033111
TCONS_00064365 lncRNA upstream 1984780 45875242 ~ 45879140 (-) True XLOC_033117
TCONS_00065222 lncRNA upstream 2033480 45923942 ~ 45929175 (-) True XLOC_033118
TCONS_00064370 lncRNA upstream 2211752 46102214 ~ 46162585 (-) True XLOC_033120
TCONS_00064345 mRNA downstream 9386 43602302 ~ 43780751 (-) False XLOC_033109
TCONS_00064344 mRNA downstream 20805 43602302 ~ 43769332 (-) False XLOC_033109
TCONS_00064348 mRNA downstream 113012 43627969 ~ 43677125 (-) False XLOC_033109
TCONS_00064347 mRNA downstream 173201 43609198 ~ 43616936 (-) False XLOC_033109
TCONS_00064341 mRNA downstream 291141 43491635 ~ 43498996 (-) True XLOC_033108
TCONS_00064353 mRNA upstream 28067 43918529 ~ 43922813 (-) True XLOC_033110
TCONS_00064355 mRNA upstream 116247 44006709 ~ 44044385 (-) True XLOC_033112
TCONS_00064356 mRNA upstream 198727 44089189 ~ 44161262 (-) True XLOC_033113
TCONS_00064358 mRNA upstream 352608 44243070 ~ 44402358 (-) False XLOC_033114
TCONS_00064357 mRNA upstream 352608 44243070 ~ 44402358 (-) False XLOC_033114
TCONS_00064336 other downstream 529813 43257845 ~ 43260324 (-) False XLOC_033105
TCONS_00064318 other downstream 819219 42952759 ~ 42970918 (-) True XLOC_033098
TCONS_00064312 other downstream 1372029 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064314 other downstream 1374258 42415366 ~ 42415879 (-) True XLOC_033096
TCONS_00064313 other downstream 1374475 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064360 other upstream 364259 44254721 ~ 44280214 (-) True XLOC_033114
TCONS_00064371 other upstream 2277555 46168017 ~ 46251940 (-) True XLOC_033121
TCONS_00064372 other upstream 2337655 46228117 ~ 46228232 (-) True XLOC_033122
TCONS_00064391 other upstream 3265840 47156302 ~ 47156416 (-) True XLOC_033135
TCONS_00064395 other upstream 3712137 47602599 ~ 47602715 (-) True XLOC_033138

Expression Profile

//