Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00064350 |
| length | 759 |
| RNA type | processed_transcript |
| GC content | 0.51 |
| exon number | 4 |
| gene id | XLOC_033109 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 43602143 ~ 43890462 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041203-1 | Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including gut; hatching gland; nervous system; pericardial region; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including Barrett's esophagus; congenital heart disease; esophagus adenocarcinoma; intellectual disability-severe speech delay-mild dysmorphism syndrome; and peritonitis. Orthologous to human FOXP1 (forkhead box P1). |
| ensembl_id | ENSDART00000149972 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00064339 | lncRNA | downstream | 482939 | 43346929 ~ 43349086 (-) | True | XLOC_033106 |
| TCONS_00064338 | lncRNA | downstream | 537264 | 43268509 ~ 43294761 (-) | True | XLOC_033105 |
| TCONS_00064337 | lncRNA | downstream | 566019 | 43264992 ~ 43266006 (-) | False | XLOC_033105 |
| TCONS_00065220 | lncRNA | downstream | 759143 | 43057976 ~ 43072882 (-) | True | XLOC_033102 |
| TCONS_00064755 | lncRNA | downstream | 765556 | 43057462 ~ 43066469 (-) | False | XLOC_033102 |
| TCONS_00064354 | lncRNA | upstream | 89279 | 43979711 ~ 44002542 (-) | False | XLOC_033111 |
| TCONS_00065221 | lncRNA | upstream | 98124 | 43988556 ~ 44002541 (-) | True | XLOC_033111 |
| TCONS_00064365 | lncRNA | upstream | 1984810 | 45875242 ~ 45879140 (-) | True | XLOC_033117 |
| TCONS_00065222 | lncRNA | upstream | 2033510 | 45923942 ~ 45929175 (-) | True | XLOC_033118 |
| TCONS_00064370 | lncRNA | upstream | 2211782 | 46102214 ~ 46162585 (-) | True | XLOC_033120 |
| TCONS_00064346 | mRNA | downstream | 14264 | 43602302 ~ 43817761 (-) | False | XLOC_033109 |
| TCONS_00064343 | mRNA | downstream | 39846 | 43602276 ~ 43792179 (-) | False | XLOC_033109 |
| TCONS_00064345 | mRNA | downstream | 51274 | 43602302 ~ 43780751 (-) | False | XLOC_033109 |
| TCONS_00064344 | mRNA | downstream | 62693 | 43602302 ~ 43769332 (-) | False | XLOC_033109 |
| TCONS_00064348 | mRNA | downstream | 154900 | 43627969 ~ 43677125 (-) | False | XLOC_033109 |
| TCONS_00064353 | mRNA | upstream | 28097 | 43918529 ~ 43922813 (-) | True | XLOC_033110 |
| TCONS_00064355 | mRNA | upstream | 116277 | 44006709 ~ 44044385 (-) | True | XLOC_033112 |
| TCONS_00064356 | mRNA | upstream | 198757 | 44089189 ~ 44161262 (-) | True | XLOC_033113 |
| TCONS_00064358 | mRNA | upstream | 352638 | 44243070 ~ 44402358 (-) | False | XLOC_033114 |
| TCONS_00064357 | mRNA | upstream | 352638 | 44243070 ~ 44402358 (-) | False | XLOC_033114 |
| TCONS_00064336 | other | downstream | 571701 | 43257845 ~ 43260324 (-) | False | XLOC_033105 |
| TCONS_00064318 | other | downstream | 861107 | 42952759 ~ 42970918 (-) | True | XLOC_033098 |
| TCONS_00064312 | other | downstream | 1413917 | 42409457 ~ 42418108 (-) | False | XLOC_033096 |
| TCONS_00064360 | other | upstream | 364289 | 44254721 ~ 44280214 (-) | True | XLOC_033114 |
| TCONS_00064371 | other | upstream | 2277585 | 46168017 ~ 46251940 (-) | True | XLOC_033121 |
| TCONS_00064372 | other | upstream | 2337685 | 46228117 ~ 46228232 (-) | True | XLOC_033122 |
| TCONS_00064391 | other | upstream | 3265870 | 47156302 ~ 47156416 (-) | True | XLOC_033135 |
| TCONS_00064395 | other | upstream | 3712167 | 47602599 ~ 47602715 (-) | True | XLOC_033138 |
