RNA id: TCONS_00006428


Basic Information

Item Value
RNA id TCONS_00006428
length 429
RNA type mRNA
GC content 0.51
exon number 4
gene id XLOC_003258
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11387509 ~ 11389462 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCCACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACGTCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCCAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcaggtga

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-41 Predicted to enable ubiquitin protein ligase activity and zinc ion binding activity. Predicted to act upstream of or within mRNA processing and protein ubiquitination. Predicted to be located in nucleus.

Ensembl:

ensembl_id ENSDART00000192505

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006420 lncRNA upstream 6795 11353459 ~ 11380887 (+) True XLOC_003252
TCONS_00008391 lncRNA upstream 27967 11359421 ~ 11359715 (+) True XLOC_003253
TCONS_00006410 lncRNA upstream 115368 11267906 ~ 11272314 (+) False XLOC_003248
TCONS_00006406 lncRNA upstream 146738 11239448 ~ 11240944 (+) True XLOC_003247
TCONS_00008390 lncRNA upstream 321890 11065500 ~ 11065792 (+) True XLOC_003244
TCONS_00006441 lncRNA downstream 115333 11504014 ~ 11513412 (+) False XLOC_003268
TCONS_00006446 lncRNA downstream 115686 11504367 ~ 11513412 (+) True XLOC_003268
TCONS_00006447 lncRNA downstream 199397 11588078 ~ 11590676 (+) True XLOC_003269
TCONS_00006451 lncRNA downstream 388686 11777367 ~ 11780863 (+) True XLOC_003270
TCONS_00006452 lncRNA downstream 403727 11792408 ~ 11796299 (+) True XLOC_003271
TCONS_00006424 mRNA upstream 11738 11374021 ~ 11375944 (+) False XLOC_003256
TCONS_00006425 mRNA upstream 12519 11374194 ~ 11375163 (+) True XLOC_003256
TCONS_00006421 mRNA upstream 25225 11360641 ~ 11362457 (+) False XLOC_003254
TCONS_00006422 mRNA upstream 25914 11360799 ~ 11361768 (+) True XLOC_003254
TCONS_00006418 mRNA upstream 38977 11347031 ~ 11348705 (+) False XLOC_003251
TCONS_00006429 mRNA downstream 19211 11407892 ~ 11409744 (+) False XLOC_003259
TCONS_00006430 mRNA downstream 19313 11407994 ~ 11408963 (+) True XLOC_003259
TCONS_00006432 mRNA downstream 30505 11419186 ~ 11421106 (+) False XLOC_003261
TCONS_00006433 mRNA downstream 30678 11419359 ~ 11420325 (+) True XLOC_003261
TCONS_00006435 mRNA downstream 41871 11430552 ~ 11432479 (+) False XLOC_003263
TCONS_00006426 other upstream 1024 11386362 ~ 11386658 (+) True XLOC_003257
TCONS_00006423 other upstream 14500 11372886 ~ 11373182 (+) True XLOC_003255
TCONS_00006417 other upstream 41583 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006412 other upstream 113082 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006409 other upstream 113125 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006431 other downstream 29352 11418033 ~ 11418323 (+) True XLOC_003260
TCONS_00006434 other downstream 40712 11429393 ~ 11429689 (+) True XLOC_003262
TCONS_00006437 other downstream 52779 11441460 ~ 11441756 (+) True XLOC_003264
TCONS_00006438 other downstream 61474 11450155 ~ 11450442 (+) True XLOC_003265
TCONS_00006439 other downstream 72125 11460806 ~ 11461102 (+) True XLOC_003266

Expression Profile

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