Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006429 |
| length | 1037 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 7 |
| gene id | XLOC_003259 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 11407892 ~ 11409744 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-141216-30 | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. |
| ensembl_id | ENSDART00000164725 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006420 | lncRNA | upstream | 27005 | 11353459 ~ 11380887 (+) | True | XLOC_003252 |
| TCONS_00008391 | lncRNA | upstream | 48177 | 11359421 ~ 11359715 (+) | True | XLOC_003253 |
| TCONS_00006410 | lncRNA | upstream | 135578 | 11267906 ~ 11272314 (+) | False | XLOC_003248 |
| TCONS_00006406 | lncRNA | upstream | 166948 | 11239448 ~ 11240944 (+) | True | XLOC_003247 |
| TCONS_00008390 | lncRNA | upstream | 342100 | 11065500 ~ 11065792 (+) | True | XLOC_003244 |
| TCONS_00006441 | lncRNA | downstream | 94270 | 11504014 ~ 11513412 (+) | False | XLOC_003268 |
| TCONS_00006446 | lncRNA | downstream | 94623 | 11504367 ~ 11513412 (+) | True | XLOC_003268 |
| TCONS_00006447 | lncRNA | downstream | 178334 | 11588078 ~ 11590676 (+) | True | XLOC_003269 |
| TCONS_00006451 | lncRNA | downstream | 367623 | 11777367 ~ 11780863 (+) | True | XLOC_003270 |
| TCONS_00006452 | lncRNA | downstream | 382664 | 11792408 ~ 11796299 (+) | True | XLOC_003271 |
| TCONS_00006427 | mRNA | upstream | 18430 | 11387509 ~ 11389462 (+) | False | XLOC_003258 |
| TCONS_00006428 | mRNA | upstream | 19211 | 11387682 ~ 11388681 (+) | True | XLOC_003258 |
| TCONS_00006424 | mRNA | upstream | 31948 | 11374021 ~ 11375944 (+) | False | XLOC_003256 |
| TCONS_00006425 | mRNA | upstream | 32729 | 11374194 ~ 11375163 (+) | True | XLOC_003256 |
| TCONS_00006421 | mRNA | upstream | 45435 | 11360641 ~ 11362457 (+) | False | XLOC_003254 |
| TCONS_00006432 | mRNA | downstream | 9442 | 11419186 ~ 11421106 (+) | False | XLOC_003261 |
| TCONS_00006433 | mRNA | downstream | 9615 | 11419359 ~ 11420325 (+) | True | XLOC_003261 |
| TCONS_00006435 | mRNA | downstream | 20808 | 11430552 ~ 11432479 (+) | False | XLOC_003263 |
| TCONS_00006436 | mRNA | downstream | 20981 | 11430725 ~ 11431699 (+) | True | XLOC_003263 |
| TCONS_00006442 | mRNA | downstream | 94270 | 11504014 ~ 11513979 (+) | False | XLOC_003268 |
| TCONS_00006426 | other | upstream | 21234 | 11386362 ~ 11386658 (+) | True | XLOC_003257 |
| TCONS_00006423 | other | upstream | 34710 | 11372886 ~ 11373182 (+) | True | XLOC_003255 |
| TCONS_00006417 | other | upstream | 61793 | 11345803 ~ 11346099 (+) | True | XLOC_003250 |
| TCONS_00006412 | other | upstream | 133292 | 11271934 ~ 11274600 (+) | False | XLOC_003248 |
| TCONS_00006409 | other | upstream | 133335 | 11267890 ~ 11274557 (+) | False | XLOC_003248 |
| TCONS_00006431 | other | downstream | 8289 | 11418033 ~ 11418323 (+) | True | XLOC_003260 |
| TCONS_00006434 | other | downstream | 19649 | 11429393 ~ 11429689 (+) | True | XLOC_003262 |
| TCONS_00006437 | other | downstream | 31716 | 11441460 ~ 11441756 (+) | True | XLOC_003264 |
| TCONS_00006438 | other | downstream | 40411 | 11450155 ~ 11450442 (+) | True | XLOC_003265 |
| TCONS_00006439 | other | downstream | 51062 | 11460806 ~ 11461102 (+) | True | XLOC_003266 |
