RNA id: TCONS_00006436


Basic Information

Item Value
RNA id TCONS_00006436
length 429
RNA type mRNA
GC content 0.50
exon number 4
gene id XLOC_003263
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11430552 ~ 11432479 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCTAAAAACACATCGGTCATCATCAGACGGGTCCCTGCTGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcaggtga

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-40 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000188040

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006420 lncRNA upstream 49838 11353459 ~ 11380887 (+) True XLOC_003252
TCONS_00008391 lncRNA upstream 71010 11359421 ~ 11359715 (+) True XLOC_003253
TCONS_00006410 lncRNA upstream 158411 11267906 ~ 11272314 (+) False XLOC_003248
TCONS_00006406 lncRNA upstream 189781 11239448 ~ 11240944 (+) True XLOC_003247
TCONS_00008390 lncRNA upstream 364933 11065500 ~ 11065792 (+) True XLOC_003244
TCONS_00006441 lncRNA downstream 72315 11504014 ~ 11513412 (+) False XLOC_003268
TCONS_00006446 lncRNA downstream 72668 11504367 ~ 11513412 (+) True XLOC_003268
TCONS_00006447 lncRNA downstream 156379 11588078 ~ 11590676 (+) True XLOC_003269
TCONS_00006451 lncRNA downstream 345668 11777367 ~ 11780863 (+) True XLOC_003270
TCONS_00006452 lncRNA downstream 360709 11792408 ~ 11796299 (+) True XLOC_003271
TCONS_00006432 mRNA upstream 9619 11419186 ~ 11421106 (+) False XLOC_003261
TCONS_00006433 mRNA upstream 10400 11419359 ~ 11420325 (+) True XLOC_003261
TCONS_00006429 mRNA upstream 20981 11407892 ~ 11409744 (+) False XLOC_003259
TCONS_00006430 mRNA upstream 21762 11407994 ~ 11408963 (+) True XLOC_003259
TCONS_00006427 mRNA upstream 41263 11387509 ~ 11389462 (+) False XLOC_003258
TCONS_00006442 mRNA downstream 72315 11504014 ~ 11513979 (+) False XLOC_003268
TCONS_00006443 mRNA downstream 72315 11504014 ~ 11513985 (+) False XLOC_003268
TCONS_00006444 mRNA downstream 72364 11504063 ~ 11513985 (+) False XLOC_003268
TCONS_00006448 mRNA downstream 287876 11719575 ~ 11781232 (+) False XLOC_003270
TCONS_00006450 mRNA downstream 319307 11751006 ~ 11781911 (+) False XLOC_003270
TCONS_00006434 other upstream 1036 11429393 ~ 11429689 (+) True XLOC_003262
TCONS_00006431 other upstream 12402 11418033 ~ 11418323 (+) True XLOC_003260
TCONS_00006426 other upstream 44067 11386362 ~ 11386658 (+) True XLOC_003257
TCONS_00006423 other upstream 57543 11372886 ~ 11373182 (+) True XLOC_003255
TCONS_00006417 other upstream 84626 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006437 other downstream 9761 11441460 ~ 11441756 (+) True XLOC_003264
TCONS_00006438 other downstream 18456 11450155 ~ 11450442 (+) True XLOC_003265
TCONS_00006439 other downstream 29107 11460806 ~ 11461102 (+) True XLOC_003266
TCONS_00006440 other downstream 30607 11462306 ~ 11462602 (+) True XLOC_003267
TCONS_00006445 other downstream 72562 11504261 ~ 11513412 (+) False XLOC_003268

Expression Profile

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