RNA id: TCONS_00006446


Basic Information

Item Value
RNA id TCONS_00006446
length 972
lncRNA type sense_over
GC content 0.43
exon number 3
gene id XLOC_003268
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11504014 ~ 11513985 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAACTTCCAGGACACCATCCAGGATCTGAGGAATGAGAATATCACCTTGACTATTGAGACTGGCGGTCAGGTGAATGTCTCTGTGGACGCAGCGCCCTCTATGGATCTGAATCAGGCCATTGATGAGATCCGACAACACTATGAGACTGTGACACAGAAAAACCGTGAAGAGCTGGAGTCCTGGTATGAAAGCAagATGGCACCAATGCAACAGGAGGTGAGCAATCATAATGAAGAGCTTCAGGACAGCAGAACTGAGCTAAAGGACTTAACAAGCACCTTACAAAGACTGCAGATTGAGCTGCAAACCCATCAGAGCATGGTAAACCTGtacacacttacaaacacacaattgattttattgcaaaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagcaatGCAGCATGGTTAAAAGTCTGTGGCAACATGTCTAGGCAGAACGTGCTGTGCCAGGCTGTTTCAACTGTCCGTGAGTTCCAGCCTCACCCCTTTTAGTTCGCCAACCAGAACTTTGCCAGCTTTACAGCAGTCAGGGGAAATGTGCTGTAATTTCCTTTGCTTACTCATTTGGAAGGACAAGAGATAGACTGTTTAAACAGGAGATAGTGTCTACAAAAATATCTGTTTTACACTTGCACCAAATAACATTCAACAATGCTGCGTGTGAATTTTGTCCAGTAAATTACaaatcattcattattattattaatctaaatatatgcatgtatataaatTCACAGAAGTCAAACCTTGATGGGCAACTAGAGGACACAGAGGCCCGCTATGGGAACCAGTTGGCTGGGCTTCAGACCACTGTTTCCAATCTGGAGGACCAGCTTAGCCAATTTCACGCTAACATTGCTAACAACAAAGAAGAGTACGAAACCCTGCTGGACGTAAAGACCAGACTGGAACGTGAGATTGCAGAATACAGGAGACTGCTGGATGGAG

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006420 lncRNA upstream 123480 11353459 ~ 11380887 (+) True XLOC_003252
TCONS_00008391 lncRNA upstream 144652 11359421 ~ 11359715 (+) True XLOC_003253
TCONS_00006410 lncRNA upstream 232053 11267906 ~ 11272314 (+) False XLOC_003248
TCONS_00006406 lncRNA upstream 263423 11239448 ~ 11240944 (+) True XLOC_003247
TCONS_00008390 lncRNA upstream 438575 11065500 ~ 11065792 (+) True XLOC_003244
TCONS_00006447 lncRNA downstream 74666 11588078 ~ 11590676 (+) True XLOC_003269
TCONS_00006451 lncRNA downstream 263955 11777367 ~ 11780863 (+) True XLOC_003270
TCONS_00006452 lncRNA downstream 278996 11792408 ~ 11796299 (+) True XLOC_003271
TCONS_00008392 lncRNA downstream 295811 11809223 ~ 11823154 (+) True XLOC_003273
TCONS_00008554 lncRNA downstream 306952 11820364 ~ 11854446 (+) True XLOC_003274
TCONS_00006435 mRNA upstream 71888 11430552 ~ 11432479 (+) False XLOC_003263
TCONS_00006436 mRNA upstream 72668 11430725 ~ 11431699 (+) True XLOC_003263
TCONS_00006432 mRNA upstream 83261 11419186 ~ 11421106 (+) False XLOC_003261
TCONS_00006433 mRNA upstream 84042 11419359 ~ 11420325 (+) True XLOC_003261
TCONS_00006429 mRNA upstream 94623 11407892 ~ 11409744 (+) False XLOC_003259
TCONS_00006448 mRNA downstream 206163 11719575 ~ 11781232 (+) False XLOC_003270
TCONS_00006450 mRNA downstream 237594 11751006 ~ 11781911 (+) False XLOC_003270
TCONS_00006449 mRNA downstream 237594 11751006 ~ 11781911 (+) False XLOC_003270
TCONS_00006453 mRNA downstream 283614 11797026 ~ 11804720 (+) True XLOC_003272
TCONS_00006454 mRNA downstream 329312 11842724 ~ 11849995 (+) True XLOC_003277
TCONS_00006440 other upstream 41765 11462306 ~ 11462602 (+) True XLOC_003267
TCONS_00006439 other upstream 43265 11460806 ~ 11461102 (+) True XLOC_003266
TCONS_00006438 other upstream 53925 11450155 ~ 11450442 (+) True XLOC_003265
TCONS_00006437 other upstream 62611 11441460 ~ 11441756 (+) True XLOC_003264
TCONS_00006434 other upstream 74678 11429393 ~ 11429689 (+) True XLOC_003262
TCONS_00006457 other downstream 649340 12162752 ~ 12163048 (+) True XLOC_003281
TCONS_00006459 other downstream 657883 12171295 ~ 12171591 (+) True XLOC_003283
TCONS_00006462 other downstream 673894 12187306 ~ 12187602 (+) True XLOC_003285
TCONS_00006463 other downstream 676313 12189725 ~ 12190024 (+) True XLOC_003286
TCONS_00006464 other downstream 695497 12208909 ~ 12209205 (+) True XLOC_003287

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU121547 True 2587 lncRNA 0.37 2 NC_056709.1 15424417 ~ 15429408 (+)