Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006451 |
| length | 771 |
| lncRNA type | retained_intron |
| GC content | 0.40 |
| exon number | 2 |
| gene id | XLOC_003270 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 11719575 ~ 11781911 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007507 | heart development | biological_process |
| GO:0030178 | negative regulation of Wnt signaling pathway | biological_process |
| GO:0003181 | atrioventricular valve morphogenesis | biological_process |
| GO:0002159 | desmosome assembly | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0003308 | negative regulation of Wnt signaling pathway involved in heart development | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0005912 | adherens junction | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0030057 | desmosome | cellular_component |
| GO:0016342 | catenin complex | cellular_component |
| GO:0035257 | nuclear hormone receptor binding | molecular_function |
| GO:0005198 | structural molecule activity | molecular_function |
| GO:0003713 | transcription coactivator activity | molecular_function |
| GO:0019903 | protein phosphatase binding | molecular_function |
| GO:0045294 | alpha-catenin binding | molecular_function |
| GO:0045296 | cadherin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-991207-22 | Predicted to enable several functions, including alpha-catenin binding activity; cadherin binding activity; and transcription coactivator activity. Acts upstream of or within atrioventricular valve morphogenesis and negative regulation of Wnt signaling pathway involved in heart development. Located in adherens junction; desmosome; and nucleus. Part of catenin complex. Is expressed in several structures, including EVL; ectoderm; forerunner cell group; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in cardiomyopathy (multiple); palmoplantar keratosis (multiple); renal cell carcinoma; and reproductive organ cancer (multiple). Orthologous to human JUP (junction plakoglobin). |
| ensembl_id | ENSDART00000146512 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006447 | lncRNA | upstream | 186691 | 11588078 ~ 11590676 (+) | True | XLOC_003269 |
| TCONS_00006441 | lncRNA | upstream | 263955 | 11504014 ~ 11513412 (+) | False | XLOC_003268 |
| TCONS_00006446 | lncRNA | upstream | 263955 | 11504367 ~ 11513412 (+) | True | XLOC_003268 |
| TCONS_00006420 | lncRNA | upstream | 396480 | 11353459 ~ 11380887 (+) | True | XLOC_003252 |
| TCONS_00008391 | lncRNA | upstream | 417652 | 11359421 ~ 11359715 (+) | True | XLOC_003253 |
| TCONS_00006452 | lncRNA | downstream | 11545 | 11792408 ~ 11796299 (+) | True | XLOC_003271 |
| TCONS_00008392 | lncRNA | downstream | 28360 | 11809223 ~ 11823154 (+) | True | XLOC_003273 |
| TCONS_00008554 | lncRNA | downstream | 39501 | 11820364 ~ 11854446 (+) | True | XLOC_003274 |
| TCONS_00008555 | lncRNA | downstream | 52481 | 11833344 ~ 11871147 (+) | True | XLOC_003275 |
| TCONS_00008556 | lncRNA | downstream | 58964 | 11839827 ~ 11876130 (+) | True | XLOC_003276 |
| TCONS_00006443 | mRNA | upstream | 263382 | 11504014 ~ 11513985 (+) | False | XLOC_003268 |
| TCONS_00006444 | mRNA | upstream | 263382 | 11504063 ~ 11513985 (+) | False | XLOC_003268 |
| TCONS_00006442 | mRNA | upstream | 263388 | 11504014 ~ 11513979 (+) | False | XLOC_003268 |
| TCONS_00006435 | mRNA | upstream | 344888 | 11430552 ~ 11432479 (+) | False | XLOC_003263 |
| TCONS_00006453 | mRNA | downstream | 16163 | 11797026 ~ 11804720 (+) | True | XLOC_003272 |
| TCONS_00006454 | mRNA | downstream | 61861 | 11842724 ~ 11849995 (+) | True | XLOC_003277 |
| TCONS_00006455 | mRNA | downstream | 193845 | 11974708 ~ 11979854 (+) | True | XLOC_003279 |
| TCONS_00006456 | mRNA | downstream | 271928 | 12052791 ~ 12092178 (+) | True | XLOC_003280 |
| TCONS_00006460 | mRNA | downstream | 394299 | 12175162 ~ 12184543 (+) | False | XLOC_003284 |
| TCONS_00006445 | other | upstream | 263955 | 11504261 ~ 11513412 (+) | False | XLOC_003268 |
| TCONS_00006440 | other | upstream | 314765 | 11462306 ~ 11462602 (+) | True | XLOC_003267 |
| TCONS_00006439 | other | upstream | 316265 | 11460806 ~ 11461102 (+) | True | XLOC_003266 |
| TCONS_00006438 | other | upstream | 326925 | 11450155 ~ 11450442 (+) | True | XLOC_003265 |
| TCONS_00006437 | other | upstream | 335611 | 11441460 ~ 11441756 (+) | True | XLOC_003264 |
| TCONS_00006457 | other | downstream | 381889 | 12162752 ~ 12163048 (+) | True | XLOC_003281 |
| TCONS_00006459 | other | downstream | 390432 | 12171295 ~ 12171591 (+) | True | XLOC_003283 |
| TCONS_00006462 | other | downstream | 406443 | 12187306 ~ 12187602 (+) | True | XLOC_003285 |
| TCONS_00006463 | other | downstream | 408862 | 12189725 ~ 12190024 (+) | True | XLOC_003286 |
| TCONS_00006464 | other | downstream | 428046 | 12208909 ~ 12209205 (+) | True | XLOC_003287 |
