RNA id: TCONS_00006453


Basic Information

Item Value
RNA id TCONS_00006453
length 3443
RNA type mRNA
GC content 0.45
exon number 12
gene id XLOC_003272
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11797026 ~ 11804720 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAAAACAAGCGCAGCCCGGTTTACCTCAGCTCCGATGACGCAAGAAATAGAATGTCTGGAACACATGCAGTACATGACGTAGTGCTTCTCTAGCTCTGAATTTTCTACACGCGCATCATTATTTGTTCAGTTGTAGAGCTGTAAAACATGTCTATGGAGCGAAAACGGAGTTCTCACAGCTATCAGGTGTATGGTTTCCGTACACCCCCAATACCCGGCACGAACGAGGCTGCGTTTCATCCCGTTTGTGTCGGTGAGGGATATGAGAAGAGTAGGAGAGAGGACGAGTGTTTGGATAGGAGGCCAAGCAGGAAACGAAAGATGGAGGAGATTTCTGCTGAAGAGCCTCCAAGAAAGAGAATGAAAGAGTTTTTTAAGGGATGTGAGAGAAAGAGGAAAATAGAGGACGGTCTTGATGAGGGAccagagagaaaaagaagaaaatatgaGTATTTAGATAGGAGGCCAAACAGGAAAAGAAAGATGGAGGAGATTTCTGCTGAAGAGCCTCCAAGAAAGAGAATGAAAGAGTTTTTTAAGGGGTGTGAGAGAAAGAGGAAAATAGAGGACGGTCTTGATGAGGGAccagagagaaaaagaagaaaatatgaGTATTTAGATAGGAGGCCAAACAGGAAACGAAAGATGGAGGAGATTTCTGCTGAAGAGCCTCCAAGAAAGAGAATGAAACAGCTTTTTAAGGGTTCTGAGAGAAAAATGAATGGGGAAGACAGTTTGTCTTTTTCTAGTTTGCCTATTAGGAGGCTAAGCAGAAAAAGAAAGTGGGAAGAGAGTTCTGCTGAAGAGCCTCCGACAAAGATAAGCAGGACAGAGTATTTTATTAAGGGGTTTAAGAGAAAAAGGAAAATGGAGGATATATTTGAAGAGGGACCCGAGAGAAAAAGgagaaaatatgaatatttagagTGTTTAAATAGGAGGCAACCCAGAAAAAGAAAGAGGGGTGAGATTTTTGGTGAAGAGCCTCTCAGAAAAAGGAAAGAGGATCACTATTTTGATGGGGGgttaaaaagtaaaagaaaaagggAAGAGATTTATTTTGAAGAGTCTTCTAGAAAGATAGAGGATGTTGATATGGGGTCAGAGACAAAGAGGAAAAGGGAGGAGGGTTTTGATGAGGGACCAGAAAGAAAAAGGAGAATGTATTTTGATTGGAGGCCGAACAGAACAAGAAAGAGAGAGGAGAGTTTTGTTGAAGAGCCTTTAAGAAAAAGGAGAAAATCAGAGTATTTTGATAGGAGGCCGAACAGAAAAAGGAAGCCGGAAGACAGTTCTGTTGTAGTGTCTCTGAGGAAAAGGAGAAAGGATGAGTATTTTGATAGTGGGCCGAACagtaaaagaaagaaggaagaaagtTCTGCTGAACATCCGGAAATGTGGAGAATGTTGGAGAGCTTTAAAAAGCTGACCACTTTTTACTCCAGTCCAACAATTGAATTAATGGATGTCCAGAGTTCTTCCAGCCATTCTGATTCGGTTCAAGCACACCACAGTCCAACCAGTGATATTCTGAGGCGGTATGAAGTCAGAAGAATTCTCTGTAGGAGAGGATCTGACACCATCTACGAGGGCAGGCGTATGACCGATAACCTCAAGGTGGCAGTGAAAGTTGTAAGAAAGTTTTGGGAGGTGACATGCATAGTGccTGGTCATCCTGTAGCCCTTCCATTAGAAGTCGGTCTATTAGCCCTTGTTAATAAGAGCCTCAGAGGTCCAAAGACCATTCAGCTGCTGGACTGGCAGGATCTGCCTGATTATTACACCATTATCTTGGAGTGTCCATCACCACGGGTTTGCCGTGAAGCCAACTTGAGTCAACAGAGCAACGGAACAATATCAACAATTGCAGGAAAGTCCAACAGCTCTGGGCTGTATGATACCGATCAAAGTGCAACATCAGTATCCAGTTCCAGTACAGATGATGAGCCAGCGAGAAACATGAGGATGACAGCCAATATAGATTTTGTACTTCTCTGGACCCAGAACAGAGAAGACAAACTGCTACAACCGATTAGCGTTGAGATGGTGTCCGCTCAGTCGGTAAAGCAGCCTGCTGTGCCAGTACATCTAAGACCCGCTGGACCTGCTGGAAATGGACAAAACATTTTGAATGGGTTTGAATTAATAAGAATGGTTGTCCATGGAACATTTGGCACCGTCTATGAAGGGAAACGCAGACGAGATGGCCTTAAGGTGGCAGTAAAATTCACCAGAAAACGCAGGAGCATGCAGTACATCAACATTCCTGGACATTTTGCACCCGTTCCATTAGAGGTGGCCAGGTTACTCATGACTAAAAAGGACCCAACAGTTCCACAGAAGTTTAAGCTGCTGGACTGGCAGGACAAGCCCGATTACTACATTATGGTCCTGAAGCGTGCCTCATCGTGGAAAGATGCAAAATCAACAACTGCACCGCAAGAAAAGAACCTGCTACAACCGATTACTGTTGAGATGGTGTCTGCCTTGTCATCGATGAAACAGTGTACTCTGCCAATATATCAGGGCCCTGCTAGAAATGGACAGAAAAGGTTGAGGGGGTTTGTATTAAAGAGAATGATTGGCCAGGGAGGATTTGGAAGAGTCTATAAAGGGACCCGCATACACGATGGCAGAAAGGTGGCAGTAAAGTTCATCAAGAAGTGGGCGACCATGCAGTACATCAatattCCGAGACATTTTGCACCTGTTCCATTAGAGGTTGCCCTGATGCTCATGGTTAATAAGAGCCCCAGGGTTCCAGAGATCATTCGGCTCCTGGACTGGGAGGACTATCCTGACCACTACATCTTGGTTTTGGAACTTTCCACACCCTGTGAAGATCTGAGCGTCTATGTTAAACGCTCTGGAGGATTCCTCAATGAAACCAAAGCACGGGTTATCATGGGGCAGACGATACGGGCCGCTCAAGTGTGCTGTGCTCGCGGAGTCTTTCACCGTGACATAAAGCTGGAGAACCTGCTGATCAACCCACAAACACTCCGGGTCAAACTGATTGACTTTGGGTGCGGGGACCTCCTGAAGGATTCTGCGTATCATCACTACAGTGGGACGAGACAGTATTCCCCTCCTGAGTTTAACATGATGAGACGGTACCATGGGAAACCTGCCACTGTGTGGTCATTGGGAATCCTGTTATATGTACTGCTGTGTGGACGCCTTCCACGATCCAGGATTTTGCTGCGGATGAATTCAAGCTGTTGGTCCAGTTCTCGCTTGTCACATGACTGTTGTGATCTGATGTGCTGCCTCCTGCAACAAGATCCATCTAAGCGGATCAGTTTAGAAGACATCCTGCATCATCCATGGtttaagGTCACCAAATGTAGCAGCTTGCCAAAGAGAAATGCTGCACAGCAGAGGAAGATCAGGCCACTACATGAGAACGAGAGGGAAACACCGAAGGGAATCAAAGTAGGAT

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-82 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000164515

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006452 lncRNA upstream 727 11792408 ~ 11796299 (+) True XLOC_003271
TCONS_00006451 lncRNA upstream 16163 11777367 ~ 11780863 (+) True XLOC_003270
TCONS_00006447 lncRNA upstream 206350 11588078 ~ 11590676 (+) True XLOC_003269
TCONS_00006441 lncRNA upstream 283614 11504014 ~ 11513412 (+) False XLOC_003268
TCONS_00006446 lncRNA upstream 283614 11504367 ~ 11513412 (+) True XLOC_003268
TCONS_00008392 lncRNA downstream 4503 11809223 ~ 11823154 (+) True XLOC_003273
TCONS_00008554 lncRNA downstream 15644 11820364 ~ 11854446 (+) True XLOC_003274
TCONS_00008555 lncRNA downstream 28624 11833344 ~ 11871147 (+) True XLOC_003275
TCONS_00008556 lncRNA downstream 35107 11839827 ~ 11876130 (+) True XLOC_003276
TCONS_00008558 lncRNA downstream 86520 11891240 ~ 11903510 (+) False XLOC_003278
TCONS_00006450 mRNA upstream 15115 11751006 ~ 11781911 (+) False XLOC_003270
TCONS_00006449 mRNA upstream 15115 11751006 ~ 11781911 (+) False XLOC_003270
TCONS_00006448 mRNA upstream 15794 11719575 ~ 11781232 (+) False XLOC_003270
TCONS_00006443 mRNA upstream 283041 11504014 ~ 11513985 (+) False XLOC_003268
TCONS_00006444 mRNA upstream 283041 11504063 ~ 11513985 (+) False XLOC_003268
TCONS_00006454 mRNA downstream 38004 11842724 ~ 11849995 (+) True XLOC_003277
TCONS_00006455 mRNA downstream 169988 11974708 ~ 11979854 (+) True XLOC_003279
TCONS_00006456 mRNA downstream 248071 12052791 ~ 12092178 (+) True XLOC_003280
TCONS_00006460 mRNA downstream 370442 12175162 ~ 12184543 (+) False XLOC_003284
TCONS_00006461 mRNA downstream 371607 12176327 ~ 12184260 (+) True XLOC_003284
TCONS_00006445 other upstream 283614 11504261 ~ 11513412 (+) False XLOC_003268
TCONS_00006440 other upstream 334424 11462306 ~ 11462602 (+) True XLOC_003267
TCONS_00006439 other upstream 335924 11460806 ~ 11461102 (+) True XLOC_003266
TCONS_00006438 other upstream 346584 11450155 ~ 11450442 (+) True XLOC_003265
TCONS_00006437 other upstream 355270 11441460 ~ 11441756 (+) True XLOC_003264
TCONS_00006457 other downstream 358032 12162752 ~ 12163048 (+) True XLOC_003281
TCONS_00006459 other downstream 366575 12171295 ~ 12171591 (+) True XLOC_003283
TCONS_00006462 other downstream 382586 12187306 ~ 12187602 (+) True XLOC_003285
TCONS_00006463 other downstream 385005 12189725 ~ 12190024 (+) True XLOC_003286
TCONS_00006464 other downstream 404189 12208909 ~ 12209205 (+) True XLOC_003287

Expression Profile

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