RNA id: TCONS_00008392


Basic Information

Item Value
RNA id TCONS_00008392
length 1622
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id XLOC_003273
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11809223 ~ 11823154 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTATAATGTCTAGTGAAATATCACAACACAGACTAAATGATCAATCTTGTGTTCTAATAATCTATATTGAGTCattcttattatGTGTTTTAGATGAAGTTGCACACATAGTGGTTAAAACAGCAACTGCATACACAACTAAGTGACCATAATGCTTAGTTCCTATTTATGTTTTTACatccttaataaataatatttaaatataatataacttcataatttataacattaaaacattaaaattaggGTAAAACACAAATGATCttttaaatattactatttatcattaataaataatataaaacattaaaaatataaaaataaagtaaaatacaaatGTGCTTataaaaatatgaccttttattattacagttattctcagtggctttggtgcatttctcacaacactatttacatttgcacaacagttaatgcatttctcaaaacaattaatcatttgtacacatcatagtagcagtttctcattcctttcaacaaattgcaaatgcttttggacatgcatcaattgctttcatacaactctctgctgatttataacattatcatttgcttatgtcatgtcagtaactgaacttgtgaatgctgaatagtcattccgtataaaactaatagtcctcatttcattacttgagtcattatatacacaaatgttgaactagttgtcacaatctgtcaagctaattttatgaaatgtttttaagtctttttttttttcctaagaaTGTCTTTTTAATTGAACAATTTCCTGAATGATTTACAGATACAGTATATGCTGCAGGTTCAGTTctaatatgttctgcaatattgtttacagttgtgcacagctctacccaaaggaagtttctgtttgttgtaaataagggtgtgtttattcttttgcacaatgctgtgaataaattagaatcgcaaagagcaaatgcagtaaaactgtgaaacatacatattcagtgtcttgtactcagatacttcagtaaatgcagtgatgtctaactttactgtagttttcagatggctgtgcaaatagtataaagtgctgtcttgagcattttcaggaagtgtcaccaacatctgacttttttgcattggaacaaatatacagagtaaactgtcataatgaaaacaggacaaagtcatttgactatcttgtcAGGACTttcaatggtgtcaggacttttaaTCTTAATGATACAGACACTTTTATTGACATCAATATTTGCTTTTGAgaaatgagctctccattttgagcaagtgacacgcttttgcaggttatcaaggttttgcagtttgtactaattgacATGTGAAATGCataaactgttgtgcaaatgtaaatagtgttgtgagaaatgcaccaaagccactgagaaaaactgtaattaataataaaaaaaatatcattattaaaaataagtaaaacacaAGTGAGCTCATAAACAGTTAACCAGCAGTATAATACATACTTATATAATTGTATTCATTATAtattatgataaatattttaaattatattttgttataaatgCACAAAAGACAAAAAGATATATAACGGATCTTTATGAAATGTTATGGGACAGAAGGTgaggttaaaaaataataaagc

Function

GO:

id name namespace
GO:0009060 aerobic respiration biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006452 lncRNA upstream 12924 11792408 ~ 11796299 (+) True XLOC_003271
TCONS_00006451 lncRNA upstream 28360 11777367 ~ 11780863 (+) True XLOC_003270
TCONS_00006447 lncRNA upstream 218547 11588078 ~ 11590676 (+) True XLOC_003269
TCONS_00006441 lncRNA upstream 295811 11504014 ~ 11513412 (+) False XLOC_003268
TCONS_00006446 lncRNA upstream 295811 11504367 ~ 11513412 (+) True XLOC_003268
TCONS_00008555 lncRNA downstream 10190 11833344 ~ 11871147 (+) True XLOC_003275
TCONS_00008556 lncRNA downstream 16673 11839827 ~ 11876130 (+) True XLOC_003276
TCONS_00008558 lncRNA downstream 68086 11891240 ~ 11903510 (+) False XLOC_003278
TCONS_00008557 lncRNA downstream 68086 11891240 ~ 11903510 (+) False XLOC_003278
TCONS_00008559 lncRNA downstream 68396 11891550 ~ 11903510 (+) False XLOC_003278
TCONS_00006453 mRNA upstream 4503 11797026 ~ 11804720 (+) True XLOC_003272
TCONS_00006450 mRNA upstream 27312 11751006 ~ 11781911 (+) False XLOC_003270
TCONS_00006449 mRNA upstream 27312 11751006 ~ 11781911 (+) False XLOC_003270
TCONS_00006448 mRNA upstream 27991 11719575 ~ 11781232 (+) False XLOC_003270
TCONS_00006443 mRNA upstream 295238 11504014 ~ 11513985 (+) False XLOC_003268
TCONS_00006454 mRNA downstream 19570 11842724 ~ 11849995 (+) True XLOC_003277
TCONS_00006455 mRNA downstream 151554 11974708 ~ 11979854 (+) True XLOC_003279
TCONS_00006456 mRNA downstream 229637 12052791 ~ 12092178 (+) True XLOC_003280
TCONS_00006460 mRNA downstream 352008 12175162 ~ 12184543 (+) False XLOC_003284
TCONS_00006461 mRNA downstream 353173 12176327 ~ 12184260 (+) True XLOC_003284
TCONS_00006445 other upstream 295811 11504261 ~ 11513412 (+) False XLOC_003268
TCONS_00006440 other upstream 346621 11462306 ~ 11462602 (+) True XLOC_003267
TCONS_00006439 other upstream 348121 11460806 ~ 11461102 (+) True XLOC_003266
TCONS_00006438 other upstream 358781 11450155 ~ 11450442 (+) True XLOC_003265
TCONS_00006437 other upstream 367467 11441460 ~ 11441756 (+) True XLOC_003264
TCONS_00006457 other downstream 339598 12162752 ~ 12163048 (+) True XLOC_003281
TCONS_00006459 other downstream 348141 12171295 ~ 12171591 (+) True XLOC_003283
TCONS_00006462 other downstream 364152 12187306 ~ 12187602 (+) True XLOC_003285
TCONS_00006463 other downstream 366571 12189725 ~ 12190024 (+) True XLOC_003286
TCONS_00006464 other downstream 385755 12208909 ~ 12209205 (+) True XLOC_003287

Expression Profile

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