RNA id: TCONS_00008554


Basic Information

Item Value
RNA id TCONS_00008554
length 1235
lncRNA type read_through
GC content 0.28
exon number 2
gene id XLOC_003274
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11820364 ~ 11854446 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTACTTTTATTCAGACATTCTGAGTGTGCCTGTCACAGGTGAGAGTTTTATGTGTCTTTATGACACGAAGTACATCAAATATTGTGGTGTTACTATAtttttacatacatatatgtttgtgttgtttaaaagtaaatgtaaaaagtaaGCTTATCAAATGATGTTCCACACTGGTACTAGTTAAAATGACACTATATTTGTTCAGTACTAGAGCTGTCAAACCATTAATCACTATTAATAGCATCCGAGGTAACAGTTTGTATTTGATAATACATTagcatatacagtacacacacacacacacacacacatacacagttgaagtcagaattattcgccctcctgtgaattgttttttcctttttcaaatatttaacaaattatgATTAATAGAactagaaaattttcacagtatttcttatattttttgttctgtagaatTATTGGTAATATTTCAactgtaataaaagcagtttttacatctttttaaaaccattttaaggtcaatgttattagctcctttaagacatatattttcgattgtctacagaacaaacaatctttATACAAGGActtccctaattaacctaattaggcctttaaatgtcactttaagctggatagtATCTTAAACaatatcaagcaaaatattatttactgtcatcatggcaaagatcaaagaaatcagttattagaaatgagttatcaaaactgtttagaaatgtgttaaacagaaattaatgacaaaaatatacAGAAGCGCTAATaatttaagagggctaataactgACTTCAACTAGatacacagaaatacacacacacacacacacacacacacacacacacacatatttcacaaaaataattttttgttttggatACACTAATTGTTTGACAGCACTATTCAGTTCATATATTTCTGCGAAAAaccataaacaaaaatataatcgATCTAATGTAAAACcgtaataaagaaataaatagcaaataaatacagtaatatgttataattcaataaataactattattaaaaGAGATGTAATCATGCTCataaatgtttcatattattgttattgatatgAGTAATATAAGCTACAATACGCtaattataatttagttttacaaaaatatttaaaatattattgggCGGGAGAGGTGGGCTTTATAATGTCTAGTGAAATATCACAACACAGACTAAATGATCAATCTTGTGTTCTAATAATCTATATTGAGT

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0021536 diencephalon development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022612 gland morphogenesis biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0035270 endocrine system development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0033504 floor plate development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0007418 ventral midline development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0030900 forebrain development biological_process
GO:0021508 floor plate formation biological_process
GO:0021510 spinal cord development biological_process
GO:0021511 spinal cord patterning biological_process
GO:0060322 head development biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006452 lncRNA upstream 24065 11792408 ~ 11796299 (+) True XLOC_003271
TCONS_00006451 lncRNA upstream 39501 11777367 ~ 11780863 (+) True XLOC_003270
TCONS_00006447 lncRNA upstream 229688 11588078 ~ 11590676 (+) True XLOC_003269
TCONS_00006441 lncRNA upstream 306952 11504014 ~ 11513412 (+) False XLOC_003268
TCONS_00008558 lncRNA downstream 36794 11891240 ~ 11903510 (+) False XLOC_003278
TCONS_00008557 lncRNA downstream 36794 11891240 ~ 11903510 (+) False XLOC_003278
TCONS_00008559 lncRNA downstream 37104 11891550 ~ 11903510 (+) False XLOC_003278
TCONS_00008560 lncRNA downstream 37106 11891552 ~ 11903510 (+) False XLOC_003278
TCONS_00008561 lncRNA downstream 37107 11891553 ~ 11903510 (+) False XLOC_003278
TCONS_00006453 mRNA upstream 15644 11797026 ~ 11804720 (+) True XLOC_003272
TCONS_00006450 mRNA upstream 38453 11751006 ~ 11781911 (+) False XLOC_003270
TCONS_00006449 mRNA upstream 38453 11751006 ~ 11781911 (+) False XLOC_003270
TCONS_00006448 mRNA upstream 39132 11719575 ~ 11781232 (+) False XLOC_003270
TCONS_00006444 mRNA upstream 306379 11504063 ~ 11513985 (+) False XLOC_003268
TCONS_00006455 mRNA downstream 120262 11974708 ~ 11979854 (+) True XLOC_003279
TCONS_00006456 mRNA downstream 198345 12052791 ~ 12092178 (+) True XLOC_003280
TCONS_00006460 mRNA downstream 320716 12175162 ~ 12184543 (+) False XLOC_003284
TCONS_00006461 mRNA downstream 321881 12176327 ~ 12184260 (+) True XLOC_003284
TCONS_00006495 mRNA downstream 865498 12719944 ~ 12728353 (+) False XLOC_003320
TCONS_00006445 other upstream 306952 11504261 ~ 11513412 (+) False XLOC_003268
TCONS_00006440 other upstream 357762 11462306 ~ 11462602 (+) True XLOC_003267
TCONS_00006439 other upstream 359262 11460806 ~ 11461102 (+) True XLOC_003266
TCONS_00006438 other upstream 369922 11450155 ~ 11450442 (+) True XLOC_003265
TCONS_00006437 other upstream 378608 11441460 ~ 11441756 (+) True XLOC_003264
TCONS_00006457 other downstream 308306 12162752 ~ 12163048 (+) True XLOC_003281
TCONS_00006459 other downstream 316849 12171295 ~ 12171591 (+) True XLOC_003283
TCONS_00006462 other downstream 332860 12187306 ~ 12187602 (+) True XLOC_003285
TCONS_00006463 other downstream 335279 12189725 ~ 12190024 (+) True XLOC_003286
TCONS_00006464 other downstream 354463 12208909 ~ 12209205 (+) True XLOC_003287

Expression Profile

//