RNA id: TCONS_00008556


Basic Information

Item Value
RNA id TCONS_00008556
length 442
lncRNA type read_through
GC content 0.57
exon number 3
gene id XLOC_003276
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11839827 ~ 11876130 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtctgtTTTGCTGGGAAGGTGGTGGAGGAGGGGGGCGTCTGTTCTGCTGGGAAGGTGGTGGAGGAGGTGGAGCTTGGCTACGGGCATTAGCATTACCATGGCCTCTTCTGTTAAGCGAGTTTCGCCTCTGTGGCAACTCCGGGGCTGGGTCACCATTTGCAGCAGGTGGCTGACGATAAGGTGGAGGTGGTGGAGGTGCATTTCCAGAGGAAATtgaagatgatgaagaggagCGAGATGAAAGGGGAGGATGTCTAGGAGTCCCCTCACGAGCAGGTGAAGGTGGAGGAGGAGGCCCTTTGCTtacaggtggtggtggtggtggaaaGGGTTTGTCACGGCTCTGCCCAGAGCCCTGTTGAGCTGAAGAGGGTCCGCGATTGCCAGCGCGATTGAAGggtggagGTGGACGCAAAGCTGATCGTCCTACAGAGCTGTCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008392 lncRNA upstream 16673 11809223 ~ 11823154 (+) True XLOC_003273
TCONS_00006452 lncRNA upstream 43528 11792408 ~ 11796299 (+) True XLOC_003271
TCONS_00006451 lncRNA upstream 58964 11777367 ~ 11780863 (+) True XLOC_003270
TCONS_00006447 lncRNA upstream 249151 11588078 ~ 11590676 (+) True XLOC_003269
TCONS_00006446 lncRNA upstream 326415 11504367 ~ 11513412 (+) True XLOC_003268
TCONS_00008558 lncRNA downstream 15110 11891240 ~ 11903510 (+) False XLOC_003278
TCONS_00008557 lncRNA downstream 15110 11891240 ~ 11903510 (+) False XLOC_003278
TCONS_00008559 lncRNA downstream 15420 11891550 ~ 11903510 (+) False XLOC_003278
TCONS_00008560 lncRNA downstream 15422 11891552 ~ 11903510 (+) False XLOC_003278
TCONS_00008561 lncRNA downstream 15423 11891553 ~ 11903510 (+) False XLOC_003278
TCONS_00006453 mRNA upstream 35107 11797026 ~ 11804720 (+) True XLOC_003272
TCONS_00006450 mRNA upstream 57916 11751006 ~ 11781911 (+) False XLOC_003270
TCONS_00006449 mRNA upstream 57916 11751006 ~ 11781911 (+) False XLOC_003270
TCONS_00006448 mRNA upstream 58595 11719575 ~ 11781232 (+) False XLOC_003270
TCONS_00006444 mRNA upstream 325842 11504063 ~ 11513985 (+) False XLOC_003268
TCONS_00006455 mRNA downstream 98578 11974708 ~ 11979854 (+) True XLOC_003279
TCONS_00006456 mRNA downstream 176661 12052791 ~ 12092178 (+) True XLOC_003280
TCONS_00006460 mRNA downstream 299032 12175162 ~ 12184543 (+) False XLOC_003284
TCONS_00006461 mRNA downstream 300197 12176327 ~ 12184260 (+) True XLOC_003284
TCONS_00006495 mRNA downstream 843814 12719944 ~ 12728353 (+) False XLOC_003320
TCONS_00006445 other upstream 326415 11504261 ~ 11513412 (+) False XLOC_003268
TCONS_00006440 other upstream 377225 11462306 ~ 11462602 (+) True XLOC_003267
TCONS_00006439 other upstream 378725 11460806 ~ 11461102 (+) True XLOC_003266
TCONS_00006438 other upstream 389385 11450155 ~ 11450442 (+) True XLOC_003265
TCONS_00006437 other upstream 398071 11441460 ~ 11441756 (+) True XLOC_003264
TCONS_00006457 other downstream 286622 12162752 ~ 12163048 (+) True XLOC_003281
TCONS_00006459 other downstream 295165 12171295 ~ 12171591 (+) True XLOC_003283
TCONS_00006462 other downstream 311176 12187306 ~ 12187602 (+) True XLOC_003285
TCONS_00006463 other downstream 313595 12189725 ~ 12190024 (+) True XLOC_003286
TCONS_00006464 other downstream 332779 12208909 ~ 12209205 (+) True XLOC_003287

Expression Profile

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